Search Results for "fastq-join"
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Showing 43 open source projects for "fastq-join"
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OctoSQL
Join, analyse and transform data from multiple databases
OctoSQL is predominantly a CLI tool which lets you query a plethora of databases and file formats using SQL through a unified interface, even do JOINs between them. (Ever needed to join a JSON file with a PostgreSQL table? OctoSQL can help you with that.) OctoSQL is a query tool that allows you to join, analyse and transform data from multiple databases and file formats using SQL. At the same time it's an easily extensible full-blown dataflow engine, and you can use it to add a SQL interface to your own applications. ... -
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FoundationDB
Open source, distributed, transactional key-value store
FoundationDB gives you the power of ACID transactions in a distributed database. FoundationDB is multi-model, meaning you can store many types data in a single database. All data is safely stored, distributed, and replicated in the Key-Value Store component. FoundationDB is easy to install, grow, and manage. It has a distributed architecture that gracefully scales out, and handles faults while acting like a single ACID database. FoundationDB provides amazing performance on commodity... -
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HoneySQL
Turn Clojure data structures into SQL
HoneySQL is a Clojure library that transforms data-structure-based query descriptions into SQL strings (with parameter separation). It focuses purely on generation—leaving execution to libraries like next.jdbc. It supports complex constructs (JOINs, subqueries, CTEs), and allows dynamic query-building with safety and readability. -
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ClickHouse
A fast open-source OLAP database management system
ClickHouse® is a fast, open-source column-oriented database management system that can generate analytical data reports through SQL queries in real time. According to several independent benchmarks, it far exceeds other comparable column-oriented database management systems, working even up to 1000 times faster. It is able to process hundreds of millions to more than a billion rows and tens of gigabytes of data per single server per second. Apart from its blazing speed, ClickHouse is highly... -
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Vuestic Admin
Free and Beautiful Vue 3 Admin Template
Vuestic Admin is built with Vuestic UI. See our issues, contributing guide and join discussions on our discord server to help us improve Vuestic Admin & Vuestic UI experience. Free and beautiful Vue.js admin template with 44+ custom UI components. Developed by Epicmax. Designed by Vasili Savitski. Based on Vuestic UI library. -
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pgactive
PostgreSQL replication extension to create an active-active database
pgactive is an open-source extension for PostgreSQL that enables active-active replication across multiple database instances—meaning each node can accept writes and replicate changes to other nodes. Traditionally PostgreSQL supports active-standby setups (single writable master), but pgactive opens up use cases such as multi-region high-availability clusters, low-latency writes from distributed apps, and blue/green migrations where both sides are writable. It builds on PostgreSQL’s logical... -
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TypeDB
TypeDB: a strongly-typed database
...TypeDB allows you to model your domain based on logical and object-oriented principles. Composed of entity, relationship, and attribute types, as well as type hierarchies, roles, and rules, TypeDB allows you to think higher-level, as opposed to join-tables, columns, documents, vertices, edges, and properties.Types provide a way to describe the logical structures of your data, allowing TypeDB to validate that your code inserts and queries data correctly. -
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OrientDB
DBMS supporting graph, document, full-text and geospatial models
OrientDB is an Open Source Multi-Model NoSQL DBMS with the support of Native Graphs, Documents, Full-Text search, Reactivity, Geo-Spatial and Object Oriented concepts. It's written in Java and it's amazingly fast. No expensive run-time JOINs, connections are managed as persistent pointers between records. You can traverse thousands of records in no time. Supports schema-less, schema-full and schema-mixed modes. Has a strong security profiling system based on user, roles and predicate... -
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Speedb
A RocksDB compliant high performance scalable embedded key-value store
The next-generation key-value storage engine.bSpeedb is 100% RocksDB compatible enhancing stability, efficiency, and overall performance. Join the Hive, Speedb’s open-source community, to interact, improve, and share knowledge and best practices on RocksDB. Speedb is a compatible alternative for LevelDB and RocksDB users who would like to take their application to the next level. When using event streaming platforms like Kafka, Flink, Spark, Splunk, Elastic, or others, consider using Speedb to enhance its performance. ... -
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BJoinTree
Using B+Tree to join tables inside an index
This is a new DBMS using the BJoinTree technology to create a B+Tree index containing tables in join. The algorithm is simple and is linear on the number of tables in join. -
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Mycat2
MySQL Proxy using Java NIO based on Sharding SQL, Calcite
...Custom Calcite distributed query engine, edit SQL to relationship algebra expression, rule optimization engine, and cost optimization engine, generate physical execution plan, support logic view. Any cross-currant cross-table join query, support cross-currant cross-table non-associated query, support cross-currant cross-table association query, support cross-currant cross-table Window grammar, support global secondary index, limited support storage process, support visualization configuration. Support parallel extraction of result sets, support the automatic transfer of back-end result sets, support multiple routing notes, and optimizer notes. ... -
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DataStation Community Edition
App to easily query, script, and visualize data from every database
...It allows you to easily build graphs and tables with data pulled from SQL databases, logging databases, metrics databases, HTTP servers, and all kinds of text and binary files. Need to join or munge data? Write embedded scripts as needed in languages like Python, JavaScript, R or SQL. All in one application. Build reports with graphs, charts and tables. Script against data. Cross-platform: Windows, macOS, and Linux. Easily fetch your data, wherever it is: 18 SQL and non-SQL databases, files, HTTP server. Over 20 supported databases out of the box including: PostgreSQL, MySQL, MariaDB, SQLite, SQL Server, Oracle, ClickHouse, Influx 1 (InfluxQL), Influx 2 (Flux), Prometheus, Elasticsearch, AWS Athena, Google BigQuery, Snowflake, Cassandra, Scylla, TimescaleDB, YugabyteDB, CockroachDB, CrateDB, QuestDB, and Airtable. -
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SQLCheck
Automatically identify anti-patterns in SQL queries
...Storing a list of IDs as a VARCHAR/TEXT column can cause performance and data integrity problems. Querying against such a column would require using pattern-matching expressions. It is awkward and costly to join a comma-separated list to matching rows. This will make it harder to validate IDs. Think about what is the greatest number of entries this list must support? Instead of using a multi-valued attribute, consider storing it in a separate table, so that each individual value of that attribute occupies a separate row. Such an intersection table implements a many-to-many relationship between the two referenced tables. ... -
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JuliaDB.jl
Parallel analytical database in pure Julia
JuliaDB is a package for working with large persistent data set. JuliaDB provides distributed table and array datastructures with convenient functions to load data from CSV. JuliaDB is Julia all the way down. This means queries can be composed with Julia code that may use a vast ecosystem of packages. -
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JAETL - Just Another ETL Tool
Just Another ETL Tool
JAETL - Just Another ETL tool is a tiny and fast ETL tool to develop data warehouse. JAETL allows to Extract data from ARFF (Weka), CSV, and SQL, Transform the data with join, replace missing values, remove duplicates, mapping filtering, variable selection, and Load the data into SQL server and export to CSV and ARFF. -
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DBLX
DBLX3 Relational Database System
DBLX 3.3 is available! DBLX is a multi-user, client-server relational database. DBLX uses standard SQL and has many types of clients, and client API's. DBLX has a REST server to allow direct access from web applications. The design goals of DBLX are to produce a very fast database which can be used with standard ANSI sql. DBLX source code is available in C# and Java. DBLX includes the server component, a command-line client, as well as client APIs. DBLX is well-documented so that... -
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JoinFinder
Help to find join between two table on MS SQL
JoinFinder is a useful tool that helps you to find join between two tables by foreign keys defined into tables or by a brute-force method. It is a Java8 project and it uses jna library for autocompletition feature. At the moment JoinFinder is in Italian and supports only MS SQL server, but I hope to add soon other DB support and English translation. -
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DbPipeline.NET
OR-Mapper for C# and VB.NET that is better than Entity Framework
The DbPipeline.NET OR-Mapper library was created out of frustration of the shortcomings of Entity Framework in handling stateless web applications and hiding of SQL from skilled developers. The DbPipeline.NET Database Interface Library shields you, the programmer, from having to learn and work with all the ADO.NET or Entity Framework database objects at a low level, and encapsulates all this power into objects with many additional capabilities and features that are not offered in the... -
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Lovefield
Lovefield is a relational database for web apps
...Queries support joins, aggregations, ordering, pagination, and predicates, enabling complex client-side data operations with transactional semantics. The engine includes a cost-based optimizer and a planner that chooses index scans and join orders to reduce latency. Because it is embedded, apps can keep responsive, offline-capable experiences while synchronizing with a server on their own schedule. The library targets maintainable, testable data logic by abstracting away browser storage quirks behind a stable relational façade. -
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littletable is a lightweight in-memory data manager of collections of Python objects, providing ORM-like access for querying and joining data using object attributes as pseudo-columns.
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DRX
Documentum administration tool
...Its compact distribution and simple installation (just unzip it!) make it easy to run from a memory stick or move from one computer to another. See a missing module? Want enhancements to an existing one? Join the DRX Project Team! The DRX Project is sponsored by Armedia, LLC (www.armedia.com). The DRX Project uses the YourKit Java Profiler (www.yourkit.com/java/profiler/index.jsp). -
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CQL
an all new query language and a sequel to SQL
The project was developed for C/C++ programmers who are not familiar with SQL syntax. -
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CSV SQL Console
Executes SQL query and redirects output to new CSV file
This tool is designed to join multiple CSV files into one CSV file with possibility to sort, group and filter data. Based on CSV/Text ODBC Driver it supports almost all futures of the SQL. Works offline. Does not require Microsoft Access, SQL Server and other heavy tools. See wiki for details. -
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CommandCentre
Command Centre
Free to join for developers who support the Free Software Foundation cause. This is my research project from 2003, which I recently updated with acceleration- and console changes (Surround Sound, Doppler Effects, Device Updates, Physics) in a long weekend but project should be considered abandoned. Additionally, the Performer libraries have been abandoned by Silicon Graphics. -
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...Nodes can do fast sync with the friends to update this node map. MD4 signiture are used for fast sync. Every working node serves a range. Every range could have 3 nodes working at the same time. If a new node has join a node map, it can find its job automatically. The ranges would be able to cover the complete 0 ~ 0xffffffff area. That makes every hash result could find a responser node. Beside the node map, a pie-slice map is also be recorded by every node. The pie-slice map is designed for fast range node finding and automatic spliting.
