Search Results for "can" - Page 7
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Showing 647 open source projects for "can"
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Compose.jl
Declarative vector graphics
Compose is a vector graphics library for Julia. It forms the basis for the statistical graphics system Gadfly. Compose is a declarative vector graphics system written in Julia. It's designed to simplify the creation of complex graphics and serves as the basis of the Gadfly data visualization package. -
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pydna
Clone with Python! Data structures for double stranded DNA
...The pydna python package provide a human-readable formal description of cloning and genetic assembly strategies in Python which allow for simulation and verification. Pydna can be used as executable documentation for cloning. -
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CounterfactualExplanations.jl
A package for Counterfactual Explanations and Algorithmic Recourse
CounterfactualExplanations.jl is a package for generating Counterfactual Explanations (CE) and Algorithmic Recourse (AR) for black-box algorithms. Both CE and AR are related tools for explainable artificial intelligence (XAI). While the package is written purely in Julia, it can be used to explain machine learning algorithms developed and trained in other popular programming languages like Python and R. See below for a short introduction and other resources or dive straight into the docs. -
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Functors.jl
Parameterise all the things
Functors.jl provides tools to express a powerful design pattern for dealing with large/ nested structures, as in machine learning and optimization. For large machine learning models, it can be cumbersome or inefficient to work with parameters as one big, flat vector, and structs help manage complexity; but it is also desirable to easily operate over all parameters at once, e.g. for changing precision or applying an optimizer update step. -
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MethodOfLines.jl
Automatic Finite Difference PDE solving with Julia SciML
MethodOfLines.jl is a Julia package for automated finite difference discretization of symbolically defined PDEs in N dimensions. It uses symbolic expressions for systems of partial differential equations as defined with ModelingToolkit.jl, and Interval from DomainSets.jl to define the space(time) over which the simulation runs. This project is under active development, therefore the interface is subject to change. The docs will be updated to reflect any changes, please check back for current... -
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CoordinateTransformations.jl
A fresh approach to coordinate transformations
CoordinateTransformations is a Julia package to manage simple or complex networks of coordinate system transformations. Transformations can be easily applied, inverted, composed, and differentiated (both with respect to the input coordinates and with respect to transformation parameters such as rotation angle). Transformations are designed to be light-weight and efficient enough for, e.g., real-time graphical applications, while support for both explicit and automatic differentiation makes it easy to perform optimization and therefore ideal for computer vision applications such as SLAM (simultaneous localization and mapping). -
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Coluna.jl
Branch-and-Price-and-Cut in Julia
...Then, Coluna reformulates the original MIP and optimizes the reformulation using the algorithms you choose. Coluna aims to be very modular and tweakable so that you can define the behavior of your customized branch-and-price-and-cut algorithm. -
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Surrogates.jl
Surrogate modeling and optimization for scientific machine learning
A surrogate model is an approximation method that mimics the behavior of a computationally expensive simulation. In more mathematical terms: suppose we are attempting to optimize a function f(p), but each calculation of f is very expensive. It may be the case we need to solve a PDE for each point or use advanced numerical linear algebra machinery, which is usually costly. The idea is then to develop a surrogate model g which approximates f by training on previous data collected from... -
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ggstatsplot
Enhancing {ggplot2} plots with statistical analysis
...In a typical exploratory data analysis workflow, data visualization and statistical modeling are two different phases: visualization informs modeling, and modeling in its turn can suggest a different visualization method, and so on and so forth. Bayesian hypothesis-testing. The central idea of {ggstatsplot} is simple: combine these two phases into one in the form of graphics with statistical details, which makes data exploration simpler and faster. Summary of statistical tests and effect sizes. -
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Gaston.jl
A julia front-end for gnuplot
Gaston is a Julia package for plotting. It provides an interface to gnuplot, a powerful plotting package available on all major platforms. The current stable release is v1.1.0, and it has been tested with Julia LTS (1.6) and stable (1.8), on Linux. Gaston should work on any platform that runs gnuplot. -
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Stan.jl
Stan.jl illustrates the usage of the 'single method' packages
...StanSample.jl, StanDiagnose.jl, etc., is a better choice for day-to-day use. To execute the most important method in Stan ("sample"), use StanSample.jl. Some Pluto notebook examples can be found in the repository. -
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AppleAccelerate.jl
Julia interface to the macOS Accelerate framework
Julia interface to the macOS Accelerate framework. This provides a Julia interface to some of the macOS Accelerate frameworks. At the moment, this package provides access to Accelerate BLAS and LAPACK using the libblastrampoline framework, an interface to the array-oriented functions, which provide a vectorized form for many common mathematical functions. The performance is significantly better than using standard libm functions in some cases, though there does appear to be some reduced... -
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GDAL.jl
Thin Julia wrapper for GDAL - Geospatial Data Abstraction Library
...This package is a binding to the C API of GDAL/OGR. It provides only a C style usage, where resources must be closed manually, and datasets are pointers. Other packages can build on top of this to provide a more Julian user experience. See for example ArchGDAL.jl. Most users will want to use ArchGDAL.jl instead of using GDAL.jl directly. -
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JUDI.jl
Julia Devito inversion
...The focus of the package lies on seismic modeling as well as PDE-constrained optimization such as full-waveform inversion (FWI) and imaging (LS-RTM). Wave equations in JUDI are solved with Devito, a Python domain-specific language for automated finite-difference (FD) computations. JUDI's modeling operators can also be used as layers in (convolutional) neural networks to implement physics-augmented deep learning algorithms thanks to its implementation of ChainRules's rrule for the linear operators representing the discre wave equation. -
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ReTest.jl
Testing framework for Julia
...This is useful for running only part of the test suite of a package. For example, if you made a change related to addition, and included "addition" in the description of the corresponding testsets, you can easily run only these tests. -
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SimpleTraits.jl
Simple Traits for Julia
This package provides a macro-based implementation of traits, using Tim Holy's trait trick. The main idea behind traits is to group types outside the type-hierarchy and to make dispatch work with that grouping. The difference to Union-types is that types can be added to a trait after the creation of the trait, whereas Union types are fixed after creation. The cool thing about Tim's trick is that there is no performance impact compared to using ordinary dispatch. For a bit of background and a quick introduction to traits watch my 10min JuliaCon 2015 talk. -
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ComponentArrays.jl
Arrays with arbitrarily nested named components
The main export of this package is the ComponentArray type. "Components" of ComponentArrays are really just array blocks that can be accessed through a named index. This will create a new ComponentArray whose data is a view into the original, allowing for standalone models to be composed together by simple function composition. In essence, ComponentArrays allow you to do the things you would usually need a modeling language for, but without actually needing a modeling language. ... -
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Molly.jl
Molecular simulation in Julia
Much of science can be explained by the movement and interaction of molecules. Molecular dynamics (MD) is a computational technique used to explore these phenomena, from noble gases to biological macromolecules. Molly.jl is a pure Julia package for MD, and for the simulation of physical systems more broadly. The package is described in a talk at Enzyme Conference 2023 and an earlier talk at the JuliaMolSim minisymposium at JuliaCon 2022. -
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DynamicalSystems.jl
Award winning software library for nonlinear dynamics timeseries
DynamicalSystems.jl is an award-winning Julia software library for nonlinear dynamics and nonlinear time series analysis. To install DynamicalSystems.jl, run import Pkg; Pkg.add("DynamicalSystems"). To learn how to use it and see its contents visit the documentation, which you can either find online or build locally by running the docs/make.jl file. DynamicalSystems.jl is part of JuliaDynamics, an organization dedicated to creating high-quality scientific software. All implemented algorithms provide a high-level scientific description of their functionality in their documentation string as well as references to scientific papers. ... -
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PDMats.jl
Uniform Interface for positive definite matrices of various structures
...Positive definite matrices are widely used in machine learning and probabilistic modeling, especially in applications related to graph analysis and Gaussian models. It is not uncommon that positive definite matrices used in practice have special structures (e.g. diagonal), which can be exploited to accelerate computation. PDMats.jl supports efficient computation on positive definite matrices of various structures. In particular, it provides uniform interfaces to use positive definite matrices of various structures for writing generic algorithms, while ensuring that the most efficient implementation is used in actual computation. -
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DiffOpt.jl
Differentiating convex optimization programs w.r.t. program parameters
...Recent work has shown how to differentiate specific subclasses of convex optimization problems. But several applications remain unexplored. With the help of automatic differentiation, differentiable optimization can have a significant impact on creating end-to-end differentiable systems to model neural networks, stochastic processes, or a game. -
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BlockArrays.jl
BlockArrays for Julia
A block array is a partition of an array into blocks or subarrays, see Wikipedia for a more extensive description. This package has two purposes. Firstly, it defines an interface for an AbstractBlockArray block arrays that can be shared among types representing different types of block arrays. The advantage to this is that it provides a consistent API for block arrays. Secondly, it also implements two different types of block arrays that follow the AbstractBlockArray interface. The type BlockArray stores each block contiguously while the type PseudoBlockArray stores the full matrix contiguously. ... -
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Bayesian Statistics
This repository holds slides and code for a full Bayesian statistics
...The background knowledge is expressed as a prior distribution and combined with observational data in the form of a likelihood function to determine the posterior distribution. The posterior can also be used for making predictions about future events. Bayesian statistics is a departure from classical inferential statistics that prohibits probability statements about parameters and is based on asymptotically sampling infinite samples from a theoretical population and finding parameter values that maximize the likelihood function. ... -
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Infiltrator.jl
No-overhead breakpoints in Julia
...Use an actual debugger if you need that level of flexibility. Running code that ends up triggering the @infiltrate REPL mode via inline evaluation in VS Code or Juno can cause issues, so it's recommended to always use the REPL directly. When the infiltration point is hit, it will drop you into an interactive REPL session that lets you inspect local variables and the call stack as well as execute arbitrary statements in the context of the current local and global scope. -
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Plots
Powerful convenience for Julia visualizations and data analysis
...It sits above other backends, like GR, PythonPlot, PGFPlotsX, or Plotly, connecting commands with implementation. If one backend does not support your desired features or make the right trade-offs, you can just switch to another backend with one command. No need to change your code. No need to learn a new syntax. Plots might be the last plotting package you ever learn.