Search Results for "gnu science" - Page 2
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Showing 746 open source projects for "gnu science"
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MCE - Marching Cube ELD
Crystallographic software for displaying voxel maps - electron density
MCE is an crystallographic experimental program for 3D and 2D electron density map visualization. The software is mainly focused on visualization of ELD calculated from X-ray diffraction data of small molecules, but it will work for small proteins as well. Download the installation file (default download) or find in "Files" the zip-file with instant copy of the program which does not require the installation. -
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Charmol
Program for molecular graphics
Charmol is a cross-platform GUI/command-line based program for making high-quality pictures of molecular structures, nowadays working on Linux, MacOS and Windows. As output, it produces POV-Ray rendered images or files in VRML format. Charmol is capable of making pictures containing: - from small- to large-size molecules - more molecules together (different settings possible) - orbitals using molden and fchk files (GTO functions up to 'h' angular momentum supported) -... -
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Billiards Everything
The Great Periodic Path Hunt at gwtokarsky.github.io
Researchers, Mathematicians and Enthusiasts. Download "Billiards Everything" to discover new periodic billiard paths, an unresolved problem from 1775! Download "Billiards Covers" to see the most current list of periodic paths in triangles. Follow "The Great Periodic Path Hunt" at gwtokarsky.github.io for the latest news. Email tokarsky@ualberta.ca for feedback. -
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OpenPTV
OpenPTV
OpenPTV is an abbreviation of the open source particle tracking velocimetry. This is an open source framework, developed jointly by academic institutions, that deals primarily with the three-dimensional particle tracking experiments in complex and turbulent flows. More about 3D-PTV on Wikipedia and links from our website: http://www.openptv.net -
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atomes
Analysis, visualization, edition of 3D atomistic models
atomes is a Free (Open Source) cross-platform software licensed under the terms of the Affero GPL v3+ license. atomes is a toolbox developed to analyze, to visualize and to create/edit 3D atomic scale models. atomes also provides an advanced input preparation system for further calculations using well known molecular dynamics codes: - Classical MD : DL-POLY and LAMMPS - ab-initio MD : CPMD and CP2K - QM-MM MD : CPMD and CP2K atomes is developed by Dr. Sébastien Le Roux, research... -
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Social Network Visualizer
Social Network Analysis and Visualization software
Visit our new site: http://socnetv.org Social Network Visualizer (SocNetV) is a social network analysis and visualization application. You can draw a social network (graph/digraph) or load an existing one (GraphML, UCINET, Pajek, etc), compute cohesion, centrality, community and structural equivalence metrics and apply various layout algorithms based on actor centrality or prestige scores (i.e. Eigenvector, Betweenness) or on dynamic models (i.e. Kamada-Kawai spring-embedder) -
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Autoplot
Autoplot is an interactive browser for data on the web
Autoplot is an interactive browser for data on the web. Give Autoplot a URL or local file name and it creates a sensible plot of the data. Autoplot allows you to interactively browse data stored in ascii, .cdf, netcdf, and many other formats. Autoplot's source has been moved to GitHub. Thanks to SourceForge for many years of hosting! -
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XLibraryDisplay
A sequence analysis tool for protein engineering
XLibraryDisplay is an intuitive sequence analysis program optimized for protein engineering. It is ideal for all directed evolution platforms including phage, ribosome, and yeast display. Analysis can be quickly done on hundreds to thousands of sequences. Best suited for Sanger sequencing. Requirements: Microsoft Windows XP, 7, 8, or 10 and Excel 2007, 2010, 2013, or 2016 Described in Stafford et al JCIM 2014: http://pubs.acs.org/doi/abs/10.1021/ci500362s -
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Relations RCP is a personal wiki style application for knowledge creation and management. Its use is the visualization of terms and concepts and the relations governing these items. Relations is implemented as Eclipse RCP application.
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PMViewer is a Visualization tool for Astrophysical N-Body and Hydro Simulations. GADGET-2 data support.With/Without periodical boundary conditions.Snapshot of scene in PPM and GIF formats.Flying in 3D space. Active/Passive Stereo 3D support.
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Thumbnailer for SXM files
Shell Extension for SXM files for Nanonis SPM images
If you do scanning probe microscopy using Nanonis controllers then this application may come in handy. This is a shell extension for Windows (Vista, 7 , 8 and above) to enable visualisation of your SXM image files in windows explorer. Hovering over the file also shows a 'tooltip' with information about the image scan size and feedback parameters used. Please make sure you download the correct version, 32 or 64 bit, depending on your computer OS version. If you download and install the... -
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QtCDB2 is new rewritten software for Coincidence Doppler Broadenning of Positron Annihilation line measurement. Instead of old QtCDB, this version doesnt need external trigger chain. Software is based on Qt and Qwt libraries. Adlink PCI-9820 or other Adlink wd-dask based DAQ is needed to run binaries. HpGe Preamplifier gain 500mV/MeV is needed to correct work.
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Java 2D & 3D visual entity relationship design & modeling (ERD,SQL) for Oracle,MSSQL,Postgres,MySQL,...,Database change&dictionary management, Swing Data Binding, Apache FOP Renderer for dot matrix printers,Sparx Enterprise Architect Reports + more
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To give users the full control over the running application. This means that an application is working according to its purpose but the control over the whole interface is taken from developer and given to users. While an application is running, users can move, resize, and tune all the screen objects through which the communication with an application is going. Set of files includes the book (both in DOC and PDF formats), a big demonstration project with all its files available (all the...
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Billiards Covers
This zip jar contains the current coverings of periodic paths.
Researchers, Mathematicians and Enthusiasts. Download "Billiards Covers" to see the most current list of periodic paths in triangles. Download "Billiards Everything" to discover new periodic billiard paths, an unresolved problem from 1775! Follow "The Great Periodic Path Hunt" at gwtokarsky.github.io for the latest news. Email tokarsky@ualberta.ca for feedback. -
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Eulumdat_3D - QLumEdit2
show and edit eulumdat files
Eulumdat_3D the better Eulumdat viewer and editor. You can view ldt files as 3D ,compare two luminaires, print a simple datasheet. From given light distribution you can create different ldt files depending on light flux and CCT also as app under https://play.google.com/store/apps/details?id=com.riloc.eulumdat -
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GDS3D
Interactive 3D Layout Viewer for GDSII
GDS3D is a cross-platform 3D hardware accelerated viewer for chip layouts. Read standalone GDS files or use the Cadence plugin for easy integration with your Virtuoso environment. Developed by PhDs of the IC-Design Group, University of Twente, The Netherlands The GDS3D project is also hosted on Github: https://github.com/icdut24/GDS3D, but currently not actively maintained by us. Forks can be found at https://github.com/trilomix/GDS3D and https://github.com/skuep/GDS3D -
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FreeImage is a library project for developers who would like to support popular graphics image formats (PNG, JPEG, TIFF, BMP and others). Some highlights are: extremely simple in use, not limited to the local PC (unique FreeImageIO) and Plugin driven!
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Analyze and visualize tours in many variations, which are recorded with a GPS device, bike-, exercise- or ergometer-computer. Some highlights: Tools are available to adjust recorded data, GPS tours can be visualized in customizable maps, ...
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TurboVNC
High-speed, 3D-friendly, TightVNC-compatible remote desktop software
TurboVNC is a high-performance, enterprise-quality version of VNC based on TightVNC, TigerVNC, and X.org. It contains a variant of Tight encoding that is tuned for maximum performance and compression with 3D applications (VirtualGL), video, and other image-intensive workloads. TurboVNC, in combination with VirtualGL, provides a complete solution for remotely displaying 3D applications with interactive performance. TurboVNC's high-speed encoding methods have been adopted by TigerVNC and... -
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GTB: Graphics Toolbox
C++ libraries and apps for computer graphics and data visualization
The Graphics Toolbox (GTB) is a collection of C++ libraries and apps for computer graphics and data visualization. Wagner Correa initially created GTB as part of his Ph.D. research at Princeton University in collaboration with Professor Claudio Silva and Dr. James Klosowski. Several other researchers later contributed to GTB (see the AUTHORS file). -
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Scaffold Hunter is a JAVA-based software tool for the analysis of structure-related biochemical data. It enables generation of and navigation in a scaffold tree hierarchy annotated with various data.
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Tree Visualisation with Visual Cues
Tree Visualisation with Visual Cues
This project extends a previous work on node link tree visualisation and interaction by providing visual clues on hidden structures. We adopt DOITree from Prefuse package (https://github.com/prefuse/Prefuse), a multi-focal tree layout algorithm, for exploring large hierarchical structures. Related publications: https://www.sciencedirect.com/science/article/pii/S1045926X1630009X https://ieeexplore.ieee.org/stamp/stamp.jsp?arnumber=6902871 -
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SBEVSL is a collaborative project between Dowling and RIT on the development of a Structural Biology Extensible Visualization Scripting Language, so that users can move freely among various molecular graphics tools, such as rasmol, pymol, raster3d, etc.
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Divide and Conquer Treemaps
Divide and Conquer Treemap Visualisation
The project develops new new techniques and algorithms for quickly partitioning and visualizing very large hierarchical structures within a variety of arbitrary shapes and space using Divide and Conquer approach for Treemaps. Related publications: https://www.sciencedirect.com/science/article/pii/S1045926X1500066X https://dl.acm.org/doi/pdf/10.1145/2493102.2493112
