Showing 23 open source projects for "images"

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  • 1
    pydna

    pydna

    Clone with Python! Data structures for double stranded DNA

    Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning. Planning genetic constructs with many parts and assembly steps, such as recombinant metabolic pathways, are often difficult to properly document as is evident from the poor state of documentation in the scientific literature. The pydna python package provide a human-readable formal description of cloning and genetic assembly strategies in Python which...
    Downloads: 0 This Week
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  • 2
    Kale

    Kale

    Kubeflow’s superfood for Data Scientists

    KALE (Kubeflow Automated pipeLines Engine) is a project that aims at simplifying the Data Science experience of deploying Kubeflow Pipelines workflows. Kubeflow is a great platform for orchestrating complex workflows on top Kubernetes and Kubeflow Pipeline provides the mean to create reusable components that can be executed as part of workflows. The self-service nature of Kubeflow make it extremely appealing for Data Science use, at it provides an easy access to advanced distributed jobs...
    Downloads: 0 This Week
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  • 3
    TensorBoardX

    TensorBoardX

    tensorboard for pytorch (and chainer, mxnet, numpy, etc.)

    The SummaryWriter class provides a high-level API to create an event file in a given directory and add summaries and events to it. The class updates the file contents asynchronously. This allows a training program to call methods to add data to the file directly from the training loop, without slowing down training. TensorboardX now supports logging directly to Comet. Comet is a free cloud based solution that allows you to automatically track, compare and explain your experiments. It adds a...
    Downloads: 0 This Week
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  • 4
    SMILI

    SMILI

    Scientific Visualisation Made Easy

    The Simple Medical Imaging Library Interface (SMILI), pronounced 'smilie', is an open-source, light-weight and easy-to-use medical imaging viewer and library for all major operating systems. The main sMILX application features for viewing n-D images, vector images, DICOMs, anonymizing, shape analysis and models/surfaces with easy drag and drop functions. It also features a number of standard processing algorithms for smoothing, thresholding, masking etc. images and models, both with graphical user interfaces and/or via the command-line. See our YouTube channel for tutorial videos via the homepage. ...
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    Downloads: 52 This Week
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  • 5
    AquaTerm is a Mac OS X grahics renderer. It allows command line applications written in ObjC, C, FORTRAN, Lisp, Perl or Python to display vector graphics, text and images using a simple API. Adapters for gnuplot, PGPLOT, and PLplot exists as well.
    Downloads: 6 This Week
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  • 6
    IPyPlot

    IPyPlot

    Fast and efficient plotting of images inside Python Notebooks

    IPyPlot is a small python package offering fast and efficient plotting of images inside Python Notebooks. It's using IPython with HTML for faster, richer and more interactive way of displaying big numbers of images.
    Downloads: 0 This Week
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  • 7
    Visdom

    Visdom

    A tool for creating, organizing, and sharing data visualizations

    ...Supports Torch and Numpy. Visdom aims to facilitate visualization of (remote) data with an emphasis on supporting scientific experimentation. Broadcast visualizations of plots, images, and text for yourself and your collaborators. Organize your visualization space programmatically or through the UI to create dashboards for live data, inspect results of experiments, or debug experimental code. Visdom has a simple set of features that can be composed for various use-cases. The UI begins as a blank slate, you can populate it with plots, images, and text. ...
    Downloads: 0 This Week
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  • 8
    The Python Computer Graphics Kit is a collection of Python modules that contain the basic types and functions to be able to create 3D computer graphics images (focusing on Pixar's RenderMan interface).
    Downloads: 0 This Week
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  • 9
    repo2docker GitHub Action

    repo2docker GitHub Action

    A GitHub action to build data science environment images

    Trigger repo2docker to build a Jupyter enabled Docker image from your GitHub repository and push this image to a Docker registry of your choice. This will automatically attempt to build an environment from configuration files found in your repository. Images generated by this action are automatically tagged with both latest and <SHA> corresponding to the relevant commit SHA on GitHub. Both tags are pushed to the Docker registry specified by the user. If an existing image with the latest tag already exists in your registry, this Action attempts to pull that image as a cache to reduce uncessary build steps.
    Downloads: 0 This Week
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  • 10
    VividSTORM

    VividSTORM

    Correlated confocal and SMLM data visualization and analysis

    VividSTORM is a free and open-source standalone software with graphical user interface, for the correlated visualization and analysis of superresolution single molecule localization microscopy (SMLM) molecule lists and conventional pixel intensity-based images. The localization points (LPs) within this ROI can be analyzed using the selected built-in functions. NOTE: If you encounter issues not addressed by the user guide, please contact by message on this site or via e-mail for additional support: vividstorm[at]koki.mta.hu If you find our software useful in your project, please cite: Correlated confocal and super-resolution imaging by VividSTORM Nature Protocols 11, 163–183 (2016) doi:10.1038/nprot.2016.002
    Downloads: 0 This Week
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  • 11
    RoiView
    Explore InSAR data and more
    Downloads: 0 This Week
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  • 12
    iTag

    iTag

    Tag images using various categories and modifiers

    ...In addition, all images that were tagged are saved.
    Downloads: 0 This Week
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  • 13
    BioImageXD - free open source software for analysis, processing and 3D rendering of multi dimensional, multi data channel, time series image data from microscopy and other sources.
    Downloads: 0 This Week
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  • 14
    OpenCMISS-Zinc

    OpenCMISS-Zinc

    A Library for Interactive Modelling and Visualisation

    The OpenCMISS-Zinc Library (opencmiss.org/zinc), or Zinc, is a software library for building interactive graphical modelling and visualisation applications. Models are represented in Zinc as mathematical fields defined over domains, including finite elements with support for high-order basis functions, complex parameter mappings and time variation, and image-based fields. Further fields can be defined by mathematical expressions and algorithms on existing fields, including image...
    Downloads: 2 This Week
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  • 15
    VIPS is an image processing suite designed for extremely large images and colorimetry. It consists of a powerful re-usable library and a graphical user interface. http://www.vips.ecs.soton.ac.uk
    Downloads: 0 This Week
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  • 16
    PyTioga is for creating figures and plots with high quality text and graphics in PDF format. Text is processed directly by TeX (not an emulation), and the graphics covers a broad range of PDF features including images, curves, clipping, and transparency.
    Downloads: 0 This Week
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  • 17
    pyLastFM graph is commandline tool for creating a nice looking graph time graph from Last.fm profile data. It uses the audioscrobbler.net XML interface and can create very high resolution output images.
    Downloads: 0 This Week
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  • 18
    PyPlotSuite aims to provide immediate, easy-to-use, GUI tools to display, analyze and create publication-quality 2D plots of 1D data series, images, 2D arrays. This project is based on (and would not exist without) pygtk, matplotlib and numpy.
    Downloads: 1 This Week
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  • 19
    This object-oriented python module converts 3D VRML models into Collada and integrates it in Google Earth (GE) through the Keyhole Markup Language (KML). It enables the visualisation of large scale aerial/satellite images in the Geo Browser.
    Downloads: 0 This Week
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  • 20
    Mainly a browser for medical patients documents. For now, it works for displaying radiology images in DICOM format. It supports Query/Retrieve. Build on Python, wxPython and ZODB.
    Downloads: 0 This Week
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  • 21
    Easy-to-learn interactive 2d plot program. Can overlay images, xy-data, and mathematical functions. Function parameters can be tuned with sliders; functions can also be automatically fitted to data. Written in Python, cross-platform, but currently broken
    Downloads: 0 This Week
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  • 22
    Computer Controlled Optical Microscopy is a package to enable camera equipped microscopes to generate multi-modal time-lapse image sequences of 3D volumes. This is achieved by periodically changing optical settings, xyz positions and acquiring images.
    Downloads: 0 This Week
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  • 23
    Modama is a new software project for processing and analysing 2d detector data (images) provided by any available detectors, mainly SAX and WAX.
    Downloads: 1 This Week
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