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As of 2018-06-28, this project has moved to https://github.com/AdamaJava. This copy of the code will remain but all new code updates and releases will be from the new site.
Java code developed by the Australian ICGC team for operating on next-generation sequencing data. This code is currently being maintained and expanded by the QIMR Berghofer Genome Informatics team (http://www.qimrberghofer.edu.au/lab/genome-informatics/)
More details and documentation can be found on the...
ValiTerms is a tool that helps the validation of terms in corpus. It finds their occurrences and allows terminologists to choose if a term is relevant or not. ValiTerms is developed at LIPN (http://www-lipn.univ-paris13.fr), RCLN team.
Please consult the wiki for instructions about installation and usage.
A set of command line tools to extract, manipulate, and present multidimensional data. These tools are targeted specifically at summarizing results of simulation experiments.
Peakplot is a Perl implemented freely available software application which labels peptide tandem mass spectra retrospectively after a Mascot database search.
Availability: http://fgcz-peakplot.uzh.ch/
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Quaternions are numbers with 4 parts: one for time, three for space.This project creates command line functions that generate thousands of points of quaternions, for the animation software. Think: analytical animation! See VisualPhysics.org examples.
ProgPorts is an administrative and easy user interface to hundreds of proteomics, molecular dynamics, and protein crystallography programs. It is a hybrid of the prog/setup system, developed at Johns Hopkins University, and GNU-Darwin ports system.
A generic geospatial analysis and viewing capability using Perl scripts that provides the foundation and structure for readily creating KML data files from disparate data sources. KML files can be read and viewed by Google Earth and other tools.
Beam and it's follow-on I-Beam are sets of programs to produce
coverage charts of radio sources. It has been used for RADAR, DME,
VOR and various communications sources specific to aviation. However, it is also valid for cell phone, TV and radio towers
Bring Dynamics 365 and Salesforce wherever you go with Resco’s solution. With powerful offline features and reliable data syncing, your team can access CRM data on mobile devices anytime, anywhere. This saves time, cuts errors, and speeds up customer visits.
Simulates and visualizes swarming algorithms with limited communication. Also provides an interface to animate particle motion by playback (with pause, fastforward, and rewind) of path information from files. Can output EPS figures and avi frames.
This small, sharp tool generates SVG charts and graphs for use in other processes. This could easily be used to generate dynamic charts for web sites, statistical displays or other data visualization in a fully-scalable way.
vuVolume is a framework for volume rendering algorithms in C++. When creating a new rendering method in vuVolume it is possible to just concentrate on the actual algorithm and let the framework take care of the more administrative tasks.
BioGraphNet is a 'sandbox' within BioMOBY, comprising a common standard and collection of services for sharing distributed protein-interaction network information. We now serve several network data types, and encourage others to participate.
ProcessViewBrowser & ProcessViewServer represent an OpenSource attempt to industrial process visualization. It is based on Qt and is very portable. (Now also available as commercial software)
Graph handling and layout software developed for helping scientific research. The interface uses Perl, the algorithms are in C++. Creates and shows 3D and 2D graph layouts (several algorithms). Has a scripting interface for graph handling.
froi (FS-FAST ROI) is a suite of Perl scripts and modules to provide easy slice-, volume-, and surface-based ROI analysis of functional MRI (fMRI) data analyzed by FS-FAST and Freesurfer (http://surfer.nmr.mgh.harvard.edu).
PERL Plot : Plotting program for DSP and Communications. Includes multi-column, scatter,bar,pole-zero,eye diagrams, log-log, polar , polar db and other plot types.
A perl script to download and archive webcam images in jpg format. The script will determine how often the image is updated and will download images to a series of sequentially numbered files.