BioGraphNet is a 'sandbox' within BioMOBY, comprising a common standard and collection of services for sharing distributed protein-interaction network information. We now serve several network data types, and encourage others to participate.
ProcessViewBrowser & ProcessViewServer represent an OpenSource attempt to industrial process visualization. It is based on Qt and is very portable. (Now also available as commercial software)
graphite: a portable graphics library, written in Java, JOGL and Postscript that allows rapid generation of high-quality graphs using an efficient, compact Java engine.
Graph handling and layout software developed for helping scientific research. The interface uses Perl, the algorithms are in C++. Creates and shows 3D and 2D graph layouts (several algorithms). Has a scripting interface for graph handling.
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Set of tools and libs for
managing structured data
in a very flexible way:
Imp./Exp. ASCII, XML, SQL,
PS, Tex/LaTex, RTF
GUI: X-Windows, MS-Windows
Interface to C++, DBs, Perl,
PHP, Java, TCP/IP
LISP-like interpreter
written in C++ using C-LIB
GEOSS: Gene Expression Open Source System (used to be called Genex Va)
GEOSS is a secure, multiuser, gene expression database and analysis package. GEOSS is distinguished by a well developed web based user interface, and analysis/reporting.
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froi (FS-FAST ROI) is a suite of Perl scripts and modules to provide easy slice-, volume-, and surface-based ROI analysis of functional MRI (fMRI) data analyzed by FS-FAST and Freesurfer (http://surfer.nmr.mgh.harvard.edu).
PERL Plot : Plotting program for DSP and Communications. Includes multi-column, scatter,bar,pole-zero,eye diagrams, log-log, polar , polar db and other plot types.
OmniGene is a set of reausable components that have been packaged into frameworks. These frameworks are used to produce domain specific services for common bioinformatics tasks including: visualization, database access, and pipeline building.
Interactive Perl environment for data analysis. It consists of several integrated tools such as a Plotting tool, Interactive Shell, and more. Written entirely in Perl using Tk.
Pinout is a perl script which makes it easy to produce nice looking postscript ballout/pinout images for BGA or PGA type integrated circuits (IC), ASIC's, FPGA's, or CPLD's.
The ADQ project aims to provide device drivers and a terminal based data acquisition and control program for the Meilhaus ME26 data acquisition board and the Meilhaus ME53 relay boards.
The data can also be displayed in real time with a Web page.
A perl script to download and archive webcam images in jpg format. The script will determine how often the image is updated and will download images to a series of sequentially numbered files.
Linguistics tool, mainly for discourse analysis. Trans-Scribe will provide users with an interface for transcribing .wav audio speech files in any language and creating documents that display, publish, or export the waveform along with transcriptions.