Open Source Mac Data Visualization Software - Page 72

The X3DToolKit is a developer's API that allows you to load X3D files into a logical graph. That graph can then be traversed and converted into your favorite Graphic Scenegraph or can be rendered using X3DTK's OpenGL scenegraph.

XGL Viewer: A simple fast program to load the XGL standard file format and display it using JOGL (OpenGL) allowing the user to move the object around in space, rotate, zoom, spin, ect... This loader should be easily integrated into any program.

ATTENTION: Cumulative update 2.5.0 has been released!! The update works for any previous 2.x.x version. If upgrading from version v1.x.x, please download and install v2.0.0 first. IMPORTANT FIXES in respect to base v2.0.0 version: v.2.5.0 introduces the Differential Attenuation and Cube Viewer utilities, and migrates user database to *.json files v2.4.3 fixes a with K element in the fit-approx method v2.4.3 fixes and issue where saving plots with fit-approx or a auto-wizard could freeze the software v2.4.2 introduces Image Viewer to Mosaic v2.4.1 fixes an issue in merging H5 or EDF datasets with Mosaic Full changelog at https://linssab.github.io/history X-Ray Fluorescence Imaging Software for Multiple Samples is an open source software to manipulate and study macro-X-Ray Fluorescence (MA-XRF) datasets. XISMuS also works as a sample management tool, where you can easily change between datasets (samples) and compare, cross-interact and normalize them.

XLSX.jl is a Julia package to read and write Excel spreadsheet files. Internally, an Excel XLSX file is just a Zip file with a set of XML files inside. The formats for these XML files are described in the Standard ECMA-376. This package follows the EMCA-376 to parse and generate XLSX files.

XNBC is a full featured application for computer naive neuroscientists. It simulates biological neural networks using graphic tools to edit neurons and networks, to run the simulation and to analyze results. Written in C, it runs on Unix and Windows. Web site : http://ticemed-sa.upmc.fr/xnbc/ All recent versions are on this site.

XO is a simple graphical oscilloscope application.

JavaScript and TypeScript finite state machines and statecharts for the modern web. Statecharts are a formalism for modeling stateful, reactive systems. This is useful for declaratively describing the behavior of your application, from the individual components to the overall application logic. XState is a library for creating, interpreting, and executing finite state machines and statecharts, as well as managing invocations of those machines as actors. The following fundamental computer science concepts are important to know how to make the best use of XState, and in general for all your current and future software projects.

To overcome current limitations in published MS data accessibility, we introduce a browser-based spectrum viewer that aims to allow exploration of alternative interpretations for MS spectra and additionally: can be operated by non-specialists, is open source, can be integrated into other software, gives appropriate publication-quality output. Spectrum Viewer is implemented totally on the client side using XHTML for menus and dialogs, SVG for spectrum and peptide display, and Javascript to drive functionality. It comprises 3 parts: (1) the core Spectrum Viewer displays peptide-spectrum matches and implements zooming, mouse-over peaks to highlight matching parts of peptide, mouse-over parts of peptide to highlight matching peaks, export SVG, and API; (2) the Auxiliary Annotator matches peptide to spectrum for given parameters and prepares the data for the Viewer; (3) these reside on a web page that provides the user control over peptides, spectra and other parameters e.g. linker mass.

Xi3D is an X3D renderer and browser for 3D Web content. It contains compliant parsers for VRML'97 types, a java scenegraph, XML bindings using SAX2, a content converter, full runtime and event model, DOM Level 2, vecmath

Inter University Multi-Modal Imaging

A Julia interface to ZeroMQ. ZMQ.jl is a Julia interface to ZeroMQ, The Intelligent Transport Layer.

ZPR is a program that produces orthophotos. The method used is to give colors to point-cloud (photo obtained by a digital camera, cloud obtained by a laser scanner) and to project the point-cloud to a requested plane. With this method, the projection pla

ZeitWort is a tool for displaying all kinds of interval-based textual information. This could be utterances in a dialogue, which is what we use it for, but it could also be events occuring during the execution of a program.

ZAE is a Zoomable multiple sequence Alignment Editor

ADrillForce project is now part (a component) of the larger project forssim. This project will close. ADrillForce is a reference implementation of haptic (force feedback) algorithms for virutal hard material collision handling and data modification.

Agile2D is a framework that provides a nearly complete implementation of Java2D built using the industry standard OpenGL API.

This software aims help students of analytic geometry courses by visualizating several key concepts.

Animaniac is an animation system. Flexible like STL, templates everywhere. Animaniac provides physics and keyframe animation methods.

The goal of anyscreen is to allow simple development of OpenGL applications running on a wide range of modern output devices. Currently, anyscreen is capable of rendering on multiple displays settings and offers various stereoscopic rendering modes.

Progress bars for threading and multiprocessing tasks on the terminal and Jupyter Notebook. atpbar can display multiple progress bars simultaneously growing to show the progresses of iterations of loops in threading or multiprocessing tasks. atpbar can display progress bars on the terminal and Jupyter Notebook. atpbar can be used with Mantichora. atpbar started its development in 2015 as part of Alphatwirl. atpbar prevented physicists from terminating their running analysis codes, which would take many hours to complete, by showing progress bars indicating their codes were actually running. The progress bars have saved the physicists countless hours in total. atpbar had been the sub-package progress of alphatwirl until it became an independent package, with the name atpbar, in February 2019.

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc. List of software packages (and the people developing these methods) for single-cell data analysis, including RNA-seq, ATAC-seq, etc. Rapid, accurate and memory-frugal preprocessing of single-cell and single-nucleus RNA-seq data. Find bimodal, unimodal, and multimodal features in your data. Ascend is an R package comprised of fast, streamlined analysis functions optimized to address the statistical challenges of single cell RNA-seq. The package incorporates novel and established methods to provide a flexible framework to perform filtering, quality control, normalization, dimension reduction, clustering, differential expression and a wide-range of plotting. An analytical framework for big-scale single cell data. Transform percentage-based units into a 2d space to evaluate changes in distribution with both magnitude and direction.

This is a LaTeX package to realise ball and spoke (ball and stick) models used in Chemistry, Physics or other Material Sciences using PGF/TikZ

beautiful-mermaid is a styling and rendering toolkit built to produce visually enhanced diagrams from Mermaid syntax, aiming to bridge the gap between simple technical diagrams and rich, presentation-ready visualizations, all while preserving the lightweight text-to-diagram workflow that Mermaid offers. Instead of plain, utilitarian shapes and lines, Beautiful Mermaid applies themes, typography enhancements, color palettes, and layout optimizations so diagrams look polished and professional without requiring manual graphic design. This makes it ideal for documentation, technical blogs, slide decks, and design discussions where clear, attractive visuals help convey complex ideas more effectively. The project includes presets for different aesthetic styles, customization options for branding or themes, and rendering pipelines that can export to multiple formats such as SVG, PNG, and PDF.

--UPDATE-- New Version is now integrated in the official PyMOL plugin repository! --UPDATE-- The BNI (Beyond Normal Interaction)- Tools is a plug in for the PyMOL molecular visualization system which adds additional functionalities and presets to the PyMOL GUI and also adds useful extended commands.