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ViSoR provides a visualization of several social indicators, statistics and crimes for the Ruhr Area in Germany. It allows users to view and compare particular suburbs or regions in this area.
JOELib/JOELib2 is a cheminformatics library which supports SMARTS substructure search, descriptor calculation, processing/filtering pipes, conversion of file formats, 100% pure Java, and interfaces to external programs (e.g. Ghemical) are available.
EdgeExpressDB (eeDB) is a federated data abstraction system designed for integrating, interpreting, and visualizing very large biology datasets. It is designed for scaling beyond Petabytes and 10^13 objects. http://fantom.gsc.riken.jp/4/edgeexpress
deegree is a Java framework for geospatial software based on the specifications of the OpenGIS Consortium and the ISO. The focus is based on the realisation of OGC specified web services. It is developed in cooperation between lat/lon and the University of Bonn.
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Software tools for building interactive information visualization applications. Prefuse supports a rich set of features for data modeling, visualization, animation, and interaction for both Java (prefuse) and Flash (prefuse flare).
The Model Interaction Environment for Neuroscience provides tools for development, searching, editing, execution, and visualization of biophysical models, abstract mathematical models, and experimental protocols used in neuroscience research.
@rbre uses X3D to let people create, visualize, browse and share genealogical data, by using 2D individual icons assembled in 3D family trees. @rbre will include P2P functions for sharing.
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This navigation tool for the site http://www.software-kompetenz.de visualizes a connection graph of articles in a knowledge database. It is a project of the Software Systems Engineering Research Group at the BTU Cottbus and cooperating partners.
iSNS is an interactive neural network simulator written in Java/Java3D. The program is intended to be used in lessons of Neural Networks. The program was developed by students as the software project at Charles University in Prague.
InfusionMonitor is a suite to sample, store and view the activity of medical infusion pumps. It currently supports Terumo pumps, and includes a TE-372 pumps simulator to try it out without the need for a real pumps network.
OntoViz, an ontology browser is an extension of my undergraduate honors thesis. This helps a user browse ontologies using a variety of graph drawing algorithms. The ontology can be specified using a text file, a local/remote database or a web service.
SenseRank Sys:
- builds the dictionaries (multidim matrices) of words’ values;
- for the set utterance in certain language builds a figure in multidimensional space (in the matrix space) of values (visual schema), which is topological view of sense
The MatrixBrowser project presents a new approach for visualizing and exploring large networked information structures which may represent, for instance, linked information resources or metadata structures such as ontologies.
A derivative of the project 'learning patterns for the design and depolyment of mathematical games' (http://lp.noe-kaleidoscope.org/), this is an on-line, html (AJAX) based editor & browser for FreeMind (http://freemind.sourceforge.net/) mindmaps.
The JChemPaint Applet and Swing Application are Java programs for drawing 2D chemical structures like those found in most chemistry textbooks. It is based on the Chemistry Development Kit (cdk.sf.net). Downloads, tracker, and source code repository can be found on https://jchempaint.github.io
Diagram (JGraph) driven simulator. Bondgraphs > nonlinear differantial system > plot: implemented for economics and ecology. Network analysis: emergy propagation implemented. Would also fit for electronics, mechanics, cost, GWP, footprint analysis.
graphite: a portable graphics library, written in Java, JOGL and Postscript that allows rapid generation of high-quality graphs using an efficient, compact Java engine.
frCoder is a set of tools used to write, test, and simulate software written for the FIRST Robotics Competition (FRC). frCoder also includes basic libraries of common techniques used in the FRC.
TM4 is a suite of applications for managing and analyzing microarray data. TM4 provides data storage and tracking, image analysis, normalization, data filtering, clustering and statistical analysis capabilities. Includes MADAM, Spotfinder, MIDAS, and MeV.
GeNetDB, contraction of Genetic Network Database, is a bioinformatic platform destined to the study of genetic regulatory networks. It contains in one place the data and the way to study them, providing the user an access to all tools needed for his work
HyperSpider (Java app) collects the link structure of a website. Data import/export from/to database and CSV-files. Export to Graphviz DOT, Resource Description Framework (RDF/DC), XML Topic Maps (XTM), Prolog, HTML. Visualization as hierarchy and map.