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Measurements.jl
Error propagation calculator and library for physical measurements
Error propagation calculator and library for physical measurements. It supports real and complex numbers with uncertainty, arbitrary precision calculations, operations with arrays, and numerical integration. Physical measures are typically reported with an error, a quantification of the uncertainty of the accuracy of the measurement. Whenever you perform mathematical operations involving these quantities you have also to propagate the uncertainty, so that the resulting number will also have... -
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G2
Interactive data-driven visualization grammar for statistical charts
G2 is a highly interactive data-driven visualization grammar for statistical charts. with a high level of usability and scalability. It provides a set of grammar, and takes users beyond a limited set of charts to an almost unlimited world of graphical forms. With G2, you can describe the visual appearance and interactive behavior of visualization just by one statement, and generate web-based views using Canvas or SVG. We have summarized a series of story design templates from lots of real... -
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AbstractGPs.jl
Abstract types and methods for Gaussian Processes
AbstractGPs.jl is a package that defines a low-level API for working with Gaussian processes (GPs), and basic functionality for working with them in the simplest cases. As such it is aimed more at developers and researchers who are interested in using it as a building block than end-users of GPs. You may want to go through the main API design documentation. -
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Rotations.jl
Julia implementations for different rotation parameterizations
3D rotations made easy in Julia. This package implements various 3D rotation parameterizations and defines conversions between them. At their heart, each rotation parameterization is a 3×3 unitary (orthogonal) matrix (based on the StaticArrays.jl package), and acts to rotate a 3-vector about the origin through matrix-vector multiplication. While the RotMatrix type is a dense representation of a 3×3 matrix, we also have sparse (or computed, rather) representations such as quaternions,... -
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JLD2
HDF5-compatible file format in pure Julia
JLD2 saves and loads Julia data structures in a format comprising a subset of HDF5, without any dependency on the HDF5 C library. JLD2 is able to read most HDF5 files created by other HDF5 implementations supporting HDF5 File Format Specification Version 3.0 (i.e. libhdf5 1.10 or later) and similarly, those should be able to read the files that JLD2 produces. JLD2 provides read-only support for files created with the JLD package. The save and load functions, provided by FileIO, provide a... -
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G6
A Graph Visualization Framework in JavaScript
G6 is graph visualization engine with simplicity and convenience. Based on the ability to customize, it provides a set of elegant graph visualization solutions and helps developers to build up applications for graph visualization, graph analysis, and graph editor. G6 is a complete graph visualization engine, which focuses on relational data. According to practical business scenarios, we found the top solutions. Well-designed simple, flexible, and extendable interfaces will satisfy your... -
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Gaston.jl
A julia front-end for gnuplot
Gaston is a Julia package for plotting. It provides an interface to gnuplot, a powerful plotting package available on all major platforms. The current stable release is v1.1.0, and it has been tested with Julia LTS (1.6) and stable (1.8), on Linux. Gaston should work on any platform that runs gnuplot. -
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gramm
Gramm is a complete data visualization toolbox for Matlab
Gramm is a MATLAB toolbox that enables the rapid creation of complex, publication-quality figures. Its design philosophy focuses on a declarative approach, where users specify the desired end result, as opposed to the traditional imperative method involving for loops, if/else statements, etc. The MATLAB implementation of gramm is inspired by the "grammar of graphics" principles (Wilkinson 1999) and the ggplot2 library for R by Hadley Wickham. As a reference to this inspiration, gramm stands... -
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PairPlots.jl
Beautiful and flexible vizualizations of high dimensional data
Beautiful and flexible visualizations of high-dimensional data. This package produces pair plots, otherwise known as corner plots or scatter plot matrices: grids of 1D and 2D histograms that allow you to visualize high-dimensional data. Pair plots are an excellent way to visualize the results of MCMC simulations, but are also a useful way to visualize correlations in general data tables. The default styles of this package roughly reproduce the output of the Python library corner.py for a... -
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LIBSVM.jl
LIBSVM bindings for Julia
LIBSVM bindings for Julia. This is a Julia interface for LIBSVM and for the linear SVM model provided by LIBLINEAR. Supports all LIBSVM models: classification C-SVC, nu-SVC, regression: epsilon-SVR, nu-SVR and distribution estimation: one-class SVM. Model objects are represented by Julia-type SVM which gives you easy access to model features and can be saved e.g. as JLD file. -
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EzXML.jl
XML/HTML handling tools for primates
EzXML.jl is a package to handle XML/HTML documents for primates. This package depends on libxml2, which will be automatically installed as an artifact via XML2_jll.jl if you use Julia 1.3 or later. Currently, Windows, Linux, macOS, and FreeBSD are now supported. -
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LatticeQCD.jl
A native Julia code for lattice QCD with dynamical fermions in 4D
This code enables you to perform lattice QCD calculations! A native Julia code for Lattice QCD. -
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BlockArrays.jl
BlockArrays for Julia
A block array is a partition of an array into blocks or subarrays, see Wikipedia for a more extensive description. This package has two purposes. Firstly, it defines an interface for an AbstractBlockArray block arrays that can be shared among types representing different types of block arrays. The advantage to this is that it provides a consistent API for block arrays. Secondly, it also implements two different types of block arrays that follow the AbstractBlockArray interface. The type... -
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Calculus.jl
Calculus functions in Julia
The Calculus package provides tools for working with the basic calculus operations of differentiation and integration. You can use the Calculus package to produce approximate derivatives by several forms of finite differencing or to produce exact derivatives using symbolic differentiation. You can also compute definite integrals by different numerical methods. -
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Arrow Julia
Official Julia implementation of Apache Arrow
This is a pure Julia implementation of the Apache Arrow data standard. This package provides Julia AbstractVector objects for referencing data that conforms to the Arrow standard. This allows users to seamlessly interface Arrow formatted data with a great deal of existing Julia code. -
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awesome-single-cell
Community-curated list of software packages and data resources
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc. List of software packages (and the people developing these methods) for single-cell data analysis, including RNA-seq, ATAC-seq, etc. Rapid, accurate and memory-frugal preprocessing of single-cell and single-nucleus RNA-seq data. Find bimodal, unimodal, and multimodal features in your data. Ascend is an R package comprised of fast, streamlined analysis functions optimized to... -
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BetaML.jl
Beta Machine Learning Toolkit
The Beta Machine Learning Toolkit is a package including many algorithms and utilities to implement machine learning workflows in Julia, Python, R and any other language with a Julia binding. All models are implemented entirely in Julia and are hosted in the repository itself (i.e. they are not wrapper to third-party models). If your favorite option or model is missing, you can try to implement it yourself and open a pull request to share it (see the section Contribute below) or request its... -
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LoggingExtras.jl
Composable Loggers for the Julia Logging StdLib
LoggingExtras allows routing logged information to different places when constructing complicated "log plumbing" systems. Built upon the concept of simple parts composed together, subtyping AbstractLogger provides a powerful and flexible definition for your logging system without a need to define any custom loggers. When we talk about composability, the composition of any set of Loggers is itself a Logger, and LoggingExtras is a composable logging system. -
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SciML Style Guide for Julia
A style guide for stylish Julia developers
The SciML Style Guide is a style guide for the Julia programming language. It is used by the SciML Open Source Scientific Machine Learning Organization. As such, it is open to discussion with the community. If the standard for code contributions is that every PR needs to support every possible input type that anyone can think of, the barrier would be too high for newcomers. Instead, the principle is to be as correct as possible to begin with, and grow the generic support over time. All... -
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Optimization.jl
Mathematical Optimization in Julia
Optimization.jl provides the easiest way to create an optimization problem and solve it. It enables rapid prototyping and experimentation with minimal syntax overhead by providing a uniform interface to >25 optimization libraries, hence 100+ optimization solvers encompassing almost all classes of optimization algorithms such as global, mixed-integer, non-convex, second-order local, constrained, etc. It allows you to choose an Automatic Differentiation (AD) backend by simply passing an... -
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SQLPad
Web-based SQL editor run in your own private cloud
A web app for writing and running SQL queries and visualizing the results. Supports Postgres, MySQL, SQL Server, ClickHouse, Crate, Vertica, Trino, Presto, SAP HANA, Cassandra, Snowflake, Google BigQuery, SQLite, TiDB, and many more via ODBC. The docker image runs on port 3000 and uses /var/lib/sqlpad for the embedded database directory. latest tag is continuously built from latest commit in repo. Only use that if you want to live on the edge, otherwise use specific version tags to ensure... -
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Ferrite.jl
Finite element toolbox for Julia
A simple finite element toolbox written in Julia. -
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SciMLBase.jl
The Base interface of the SciML ecosystem
SciMLBase.jl is the core interface definition of the SciML ecosystem. It is a low-dependency library made to be depended on by the downstream libraries to supply the common interface and allow for the interexchange of mathematical problems. The SciML common interface ties together the numerical solvers of the Julia package ecosystem into a single unified interface. It is designed for maximal efficiency and parallelism, while incorporating essential features for large-scale scientific machine... -
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Bayesian Optimization
Python implementation of global optimization with gaussian processes
This is a constrained global optimization package built upon bayesian inference and gaussian process, that attempts to find the maximum value of an unknown function in as few iterations as possible. This technique is particularly suited for optimization of high cost functions, situations where the balance between exploration and exploitation is important. More detailed information, other advanced features, and tips on usage/implementation can be found in the examples folder. Follow the basic... -
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wavesurfer.js
Navigable waveform built on Web Audio and Canvas
wavesurfer.js is a customizable audio waveform visualization, built on top of Web Audio API and HTML5 Canvas. With wavesurfer.js you can create anything from an HTML5 audio player to a sophisticated DJ application. wavesurfer.js works only in modern browsers supporting Web Audio. It will fallback to Audio Element without graphics in other browsers (IE 11 and lower). You can also try wavesurfer.swf which is a Flash-based fallback. The audio will start playing as you press play. A thin line...
