Showing 2020 open source projects for "gnu/linux"

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  • 1
    GDAL.jl

    GDAL.jl

    Thin Julia wrapper for GDAL - Geospatial Data Abstraction Library

    Julia wrapper for GDAL - Geospatial Data Abstraction Library. This package is a binding to the C API of GDAL/OGR. It provides only a C style usage, where resources must be closed manually, and datasets are pointers. Other packages can build on top of this to provide a more Julian user experience. See for example ArchGDAL.jl. Most users will want to use ArchGDAL.jl instead of using GDAL.jl directly.
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  • 2
    JUDI.jl

    JUDI.jl

    Julia Devito inversion

    JUDI is a framework for large-scale seismic modeling and inversion and is designed to enable rapid translations of algorithms to fast and efficient code that scales to industry-size 3D problems. The focus of the package lies on seismic modeling as well as PDE-constrained optimization such as full-waveform inversion (FWI) and imaging (LS-RTM). Wave equations in JUDI are solved with Devito, a Python domain-specific language for automated finite-difference (FD) computations. JUDI's modeling...
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  • 3
    ScientificTypes.jl

    ScientificTypes.jl

    An API for dispatching on the "scientific" type of data

    This package makes a distinction between machine type and scientific type of a Julia object. The machine type refers to the Julia type being used to represent the object (for instance, Float64). The scientific type is one of the types defined in ScientificTypesBase.jl reflecting how the object should be interpreted (for instance, Continuous or Multiclass).
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  • 4
    ReTest.jl

    ReTest.jl

    Testing framework for Julia

    ReTest is a testing framework for Julia allowing defining tests in source files, whose execution is deferred and triggered on demand. This is useful when one likes to have definitions of methods and corresponding tests close to each other. This is also useful for code that is not (yet) organized as a package, and where one doesn't want to maintain a separate set of files for tests. Filtering run testsets with a Regex, which is matched against the descriptions of testsets. This is useful for...
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  • 5
    ConformalPrediction.jl

    ConformalPrediction.jl

    Predictive Uncertainty Quantification through Conformal Prediction

    ConformalPrediction.jl is a package for Predictive Uncertainty Quantification (UQ) through Conformal Prediction (CP) in Julia. It is designed to work with supervised models trained in MLJ (Blaom et al. 2020). Conformal Prediction is easy-to-understand, easy-to-use and model-agnostic and it works under minimal distributional assumptions. Intuitively, CP works under the premise of turning heuristic notions of uncertainty into rigorous uncertainty estimates through repeated sampling or the use...
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  • 6
    CBinding.jl

    CBinding.jl

    Automatic C interfacing for Julia

    Use CBinding.jl to automatically create C library bindings with Julia at runtime. In order to support the fully automatic conversion and avoid name collisions, the names of C types or functions are mangled a bit to work in Julia. Therefore everything generated by CBinding.jl can be accessed with the c"..." string macro to indicate that it lives in C-land. As an example, the function func above is available in Julia as c"func". It is possible to store the generated bindings to more...
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  • 7
    CausalityTools.jl

    CausalityTools.jl

    Algorithms for detecting associations, dynamical influences

    CausalityTools.jl is a package for quantifying associations and dynamical coupling between datasets, independence testing, and causal inference. Association measures from conventional statistics, information theory, and dynamical systems theory, for example, distance correlation, mutual information, transfer entropy, convergent cross mapping and a lot more. A dedicated API for independence testing, which comes with automatic compatibility with every measure-estimator combination you can...
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  • 8
    Compat.jl

    Compat.jl

    Compatibility across Julia versions

    The Compat package is designed to ease interoperability between older and newer versions of the Julia language. In particular, in cases where it is impossible to write code that works with both the latest Julia master branch and older Julia versions, or impossible to write code that doesn't generate a deprecation warning in some Julia version, the Compat package provides a macro that lets you use the latest syntax in a backward-compatible way. This is primarily intended for use by other...
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  • 9
    NCDatasets.jl

    NCDatasets.jl

    Load and create NetCDF files in Julia

    NCDatasets allows one to read and create netCDF files. NetCDF data set and attribute list behave like Julia dictionaries and variables like Julia arrays. This package implements the CommonDataModel.jl interface, which means that the datasets can be accessed in the same way as GRIB files opened with GRIBDatasets.jl.
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  • 10
    ChaosTools.jl

    ChaosTools.jl

    Tools for the exploration of chaos and nonlinear dynamics

    A Julia module that offers various tools for analyzing nonlinear dynamics and chaotic behavior. It can be used as a standalone package, or as part of DynamicalSystems.jl. All further information is provided in the documentation, which you can either find online or build locally by running the docs/make.jl file. ChaosTools.jl is the jack-of-all-trades package of the DynamicalSystems.jl library: methods that are not extensive enough to be a standalone package are added here. You should see the...
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  • 11
    LaTeXStrings.jl

    LaTeXStrings.jl

    convenient input and display of LaTeX equation strings for Julia

    This is a small package to make it easier to type LaTeX equations in string literals in the Julia language, written by Steven G. Johnson. With ordinary strings in Julia, to enter a string literal with embedded LaTeX equations you need to manually escape all backslashes and dollar signs: for example, $\alpha^2$ is written \$\\alpha^2\$. Also, even though IJulia is capable of displaying formatted LaTeX equations (via MathJax), an ordinary string will not exploit this.
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  • 12
    ComponentArrays.jl

    ComponentArrays.jl

    Arrays with arbitrarily nested named components

    The main export of this package is the ComponentArray type. "Components" of ComponentArrays are really just array blocks that can be accessed through a named index. This will create a new ComponentArray whose data is a view into the original, allowing for standalone models to be composed together by simple function composition. In essence, ComponentArrays allow you to do the things you would usually need a modeling language for, but without actually needing a modeling language. The main...
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  • 13
    ReverseDiff

    ReverseDiff

    Reverse Mode Automatic Differentiation for Julia

    ReverseDiff is a fast and compile-able tape-based reverse mode automatic differentiation (AD) that implements methods to take gradients, Jacobians, Hessians, and higher-order derivatives of native Julia functions (or any callable object, really). While performance can vary depending on the functions you evaluate, the algorithms implemented by ReverseDiff generally outperform non-AD algorithms in both speed and accuracy.
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  • 14
    Molly.jl

    Molly.jl

    Molecular simulation in Julia

    Much of science can be explained by the movement and interaction of molecules. Molecular dynamics (MD) is a computational technique used to explore these phenomena, from noble gases to biological macromolecules. Molly.jl is a pure Julia package for MD, and for the simulation of physical systems more broadly. The package is described in a talk at Enzyme Conference 2023 and an earlier talk at the JuliaMolSim minisymposium at JuliaCon 2022. Slides are also available for a tutorial in September...
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  • 15
    Interpolations.jl

    Interpolations.jl

    Fast, continuous interpolation of discrete datasets in Julia

    This package implements a variety of interpolation schemes for the Julia language. It has the goals of ease of use, broad algorithmic support, and exceptional performance. Currently, this package supports B-splines and irregular grids. The API has been designed with the intent to support more options. Initial support for Lanczos interpolation was recently added. Pull requests are more than welcome! It should be noted that the API may continue to evolve over time.
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  • 16
    Literate

    Literate

    Simple package for literate programming in Julia

    Literate is a package for Literate Programming. The main purpose is to facilitate writing Julia examples/tutorials that can be included in your package documentation. Literate can generate markdown pages (for e.g. Documenter.jl), and Jupyter notebooks, from the same source file. There is also an option to "clean" the source from all metadata, and produce a pure Julia script. Using a single source file for multiple purposes reduces maintenance, and makes sure your different output formats are...
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  • 17
    Unitful.jl

    Unitful.jl

    Physical quantities with arbitrary units

    Unitful is a Julia package for physical units. We want to support not only SI units but also any other unit system. We also want to minimize or in some cases eliminate the run-time penalty of units. There should be facilities for dimensional analysis. All of this should integrate easily with the usual mathematical operations and collections that are found in Julia base.
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  • 18
    vim‑sneak

    vim‑sneak

    The missing motion for Vim

    vim‑sneak is a minimalist yet powerful navigation plugin for Vim, designed to jump to any location specified by two characters. It maintains compatibility with Vim's operators, macros, visual mode, repeat (.), and supports multibyte text. It provides intuitive highlights that disappear once the jump is completed. Sneak has <Plug> mappings for f and t 1-character-sneak. These mappings do not invoke label-mode, even if you have it enabled. Highlights matches in the direction of your search....
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  • 19
    The ARCHModels Package for Julia

    The ARCHModels Package for Julia

    A Julia package for estimating ARMA-GARCH models

    ARCH (Autoregressive Conditional Heteroskedasticity) models are a class of models designed to capture a feature of financial returns data known as volatility clustering, i.e., the fact that large (in absolute value) returns tend to cluster together, such as during periods of financial turmoil, which then alternate with relatively calmer periods. This package provides efficient routines for simulating, estimating, and testing a variety of GARCH models. ARCH (Autoregressive Conditional...
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  • 20
    Vulkan.jl

    Vulkan.jl

    Using Vulkan from Julia

    Vulkan.jl is a lightweight wrapper around the Vulkan graphics and compute library. It exposes abstractions over the underlying C interface, primarily geared toward developers looking for a more natural way to work with Vulkan with minimal overhead. It builds upon the core API provided by VulkanCore.jl. Because Vulkan is originally a C specification, interfacing with it requires some knowledge before correctly being used from Julia. This package acts as an abstraction layer, so that you don't...
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  • 21
    PlutoSliderServer.jl

    PlutoSliderServer.jl

    Web server to run just the `@bind` parts of a Pluto.jl notebook

    Web server to run just the @bind parts of a Pluto.jl notebook. PlutoSliderServer can run a notebook and generate the export HTML file. This will give you the same file as the export button inside Pluto (top right), but automatically, without opening a browser. One use case is to automatically create a GitHub Pages site from a repository with notebooks. For this, take a look at our template repository that used GitHub Actions and PlutoSliderServer to generate a website on every commit. Many...
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  • 22
    Fermi.jl

    Fermi.jl

    Fermi quantum chemistry program

    Fermi.jl is a quantum chemistry framework written in pure Julia. This code is developed at the Center for Computational Quantum Chemistry at the University of Georgia under the supervision of Dr. Justin M. Turney and Prof. Henry F. Schaefer. This work is supported by the U.S. National Science Foundation under grant number CHE-1661604. Fermi focuses on post Hartree--Fock methods. Currently, only restricted references are supported. This is intended as a research code with an ever growing...
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  • 23
    MLJBase.jl

    MLJBase.jl

    Core functionality for the MLJ machine learning framework

    Repository for developers that provides core functionality for the MLJ machine learning framework. MLJ is a Julia framework for combining and tuning machine learning models. This repository provides core functionality for MLJ.
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  • 24
    Coverage.jl

    Coverage.jl

    Take Julia code coverage and memory allocation results, do useful thin

    Julia can track how many times, if any, each line of your code is run. This is useful for measuring how much of your code base your tests actually test, and can reveal the parts of your code that are not tested and might be hiding a bug. You can use Coverage.jl to summarize the results of this tracking or to send them to a service like Coveralls.io or Codecov.io. Julia can track how much memory is allocated by each line of your code. This can reveal problems like type instability, or...
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  • 25
    QuadGK.jl

    QuadGK.jl

    adaptive 1d numerical Gauss–Kronrod integration in Julia

    This package provides support for one-dimensional numerical integration in Julia using adaptive Gauss-Kronrod quadrature. The code was originally part of Base Julia. It supports the integration of arbitrary numeric types, including arbitrary-precision (BigFloat), and even the integration of arbitrary normed vector spaces. The package provides three basic functions: quadgk, gauss, and kronrod. quadgk performs the integration, gauss computes Gaussian quadrature points and weights for...
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