Search Results for "bcftools-windows" - Page 9
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Showing 2259 open source projects for "bcftools-windows"
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Automa.jl
A julia code generator for regular expressions
Automa is a regex-to-Julia compiler. By compiling regex to Julia code in the form of Expr objects, Automa provides facilities to create efficient and robust regex-based lexers, tokenizers and parsers using Julia's metaprogramming capabilities. You can view Automa as a regex engine that can insert arbitrary Julia code into its input-matching process, which will be executed when certain parts of the regex match an input. -
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GDAL.jl
Thin Julia wrapper for GDAL - Geospatial Data Abstraction Library
Julia wrapper for GDAL - Geospatial Data Abstraction Library. This package is a binding to the C API of GDAL/OGR. It provides only a C style usage, where resources must be closed manually, and datasets are pointers. Other packages can build on top of this to provide a more Julian user experience. See for example ArchGDAL.jl. Most users will want to use ArchGDAL.jl instead of using GDAL.jl directly. -
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JUDI.jl
Julia Devito inversion
JUDI is a framework for large-scale seismic modeling and inversion and is designed to enable rapid translations of algorithms to fast and efficient code that scales to industry-size 3D problems. The focus of the package lies on seismic modeling as well as PDE-constrained optimization such as full-waveform inversion (FWI) and imaging (LS-RTM). Wave equations in JUDI are solved with Devito, a Python domain-specific language for automated finite-difference (FD) computations. JUDI's modeling... -
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CBinding.jl
Automatic C interfacing for Julia
Use CBinding.jl to automatically create C library bindings with Julia at runtime. In order to support the fully automatic conversion and avoid name collisions, the names of C types or functions are mangled a bit to work in Julia. Therefore everything generated by CBinding.jl can be accessed with the c"..." string macro to indicate that it lives in C-land. As an example, the function func above is available in Julia as c"func". It is possible to store the generated bindings to more... -
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SimpleTraits.jl
Simple Traits for Julia
This package provides a macro-based implementation of traits, using Tim Holy's trait trick. The main idea behind traits is to group types outside the type-hierarchy and to make dispatch work with that grouping. The difference to Union-types is that types can be added to a trait after the creation of the trait, whereas Union types are fixed after creation. The cool thing about Tim's trick is that there is no performance impact compared to using ordinary dispatch. For a bit of background and a... -
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CompatHelper.jl
Automatically update the [compat] entries for your Julia dependencies
CompatHelper.jl is a Julia package which keeps your Project.toml [compat] entries up to date. -
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FastGaussQuadrature.jl
Julia package for Gaussian quadrature
A Julia package to compute n-point Gauss quadrature nodes and weights to 16-digit accuracy and in O(n) time. So far the package includes gausschebyshev(), gausslegendre(), gaussjacobi(), gaussradau(), gausslobatto(), gausslaguerre(), and gausshermite(). This package is heavily influenced by Chebfun. -
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Parameters.jl
Types w/ default field values, keyword constructors, (un-)pack macros
This is a package I use to handle numerical-model parameters, thus the name. However, it should be useful otherwise too. -
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JavaCall.jl
Call Java from Julia
Call Java programs from Julia. Julia 1.3.0 through Julia 1.6.2 are tested and guaranteed to work on Linux, macOS, and Windows via continuous integration. Julia 1.6.2 and newer should work on Linux and Windows. The JULIA_COPY_STACKS environment variable should be set to 1 on macOS and Linux, but not Windows. -
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Coverage.jl
Take Julia code coverage and memory allocation results, do useful thin
Julia can track how many times, if any, each line of your code is run. This is useful for measuring how much of your code base your tests actually test, and can reveal the parts of your code that are not tested and might be hiding a bug. You can use Coverage.jl to summarize the results of this tracking or to send them to a service like Coveralls.io or Codecov.io. Julia can track how much memory is allocated by each line of your code. This can reveal problems like type instability, or... -
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ExplainableAI.jl
Explainable AI in Julia
This package implements interpretability methods for black box models, with a focus on local explanations and attribution maps in input space. It is similar to Captum and Zennit for PyTorch and iNNvestigate for Keras models. Most of the implemented methods only require the model to be differentiable with Zygote. Layerwise Relevance Propagation (LRP) is implemented for use with Flux.jl models. -
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MultilayerGraphs.jl
Julia package for the creation and analysis of multilayer graphs
MultilayerGraphs.jl is a Julia package for the creation, manipulation and analysis of the structure, dynamics and functions of multilayer graphs. A multilayer graph is a graph consisting of multiple standard subgraphs called layers which can be interconnected through bipartite graphs called interlayers composed of the vertex sets of two different layers and the edges between them. The vertices in each layer represent a single set of nodes, although not all nodes have to be represented in... -
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Polyhedra
Polyhedral Computation Interface
Polyhedra provides an unified interface for Polyhedral Computation Libraries such as CDDLib.jl. This manipulation notably includes the transformation from (resp. to) an inequality representation of a polyhedron to (resp. from) its generator representation (convex hull of points + conic hull of rays) and projection/elimination of a variable with e.g. Fourier-Motzkin. -
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Clang.jl
C binding generator and Julia interface to libclang
This package provides a Julia language wrapper for libclang: the stable, C-exported interface to the LLVM Clang compiler. The libclang API documentation provides background on the functionality available through libclang, and thus through the Julia wrapper. The repository also hosts related tools built on top of libclang functionality. -
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VGit
Visual git plugin for Neovim
Visual Git Plugin for Neovim to enhance your git experience. -
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CoordinateTransformations.jl
A fresh approach to coordinate transformations
CoordinateTransformations is a Julia package to manage simple or complex networks of coordinate system transformations. Transformations can be easily applied, inverted, composed, and differentiated (both with respect to the input coordinates and with respect to transformation parameters such as rotation angle). Transformations are designed to be light-weight and efficient enough for, e.g., real-time graphical applications, while support for both explicit and automatic differentiation makes... -
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Metalhead.jl
Computer vision models for Flux
Metalhead.jl provides standard machine learning vision models for use with Flux.jl. The architectures in this package make use of pure Flux layers, and they represent the best practices for creating modules like residual blocks, inception blocks, etc. in Flux. Metalhead also provides some building blocks for more complex models in the Layers module. -
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GemGIS
Spatial data processing for geomodeling
GemGIS is a Python-based, open-source geographic information processing library. It is capable of preprocessing spatial data such as vector data (shape files, geojson files, geopackages,…), raster data (tif, png,…), data obtained from online services (WCS, WMS, WFS) or XML/KML files (soon). Preprocessed data can be stored in a dedicated Data Class to be passed to the geomodeling package GemPy in order to accelerate the model-building process. Postprocessing of model results will allow export... -
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HCubature.jl
Pure-Julia multidimensional h-adaptive integration
The HCubature module is a pure-Julia implementation of multidimensional "h-adaptive" integration. then hcubature(f, a, b) computes the integral, adaptively subdividing the integration volume into smaller and smaller pieces until convergence is achieved to the desired tolerance (specified by optional rtol and atol keyword arguments. Because hcubature is written purely in Julia, the integrand f(x) can return any vector-like object (technically, any type supporting +, -, * real, and norm: a... -
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Wavelets.jl
A Julia package for fast discrete wavelet transforms and utilities
A Julia package for fast wavelet transforms (1-D, 2-D, 3-D, by filtering or lifting). The package includes discrete wavelet transforms, column-wise discrete wavelet transforms, and wavelet packet transforms. 1st generation wavelets using filter banks (periodic and orthogonal). Filters are included for the following types: Haar, Daubechies, Coiflet, Symmlet, Battle-Lemarie, Beylkin, Vaidyanathan. 2nd generation wavelets by lifting (periodic and general type including orthogonal and... -
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GraphNeuralNetworks.jl
Graph Neural Networks in Julia
GraphNeuralNetworks.jl is a graph neural network library written in Julia and based on the deep learning framework Flux.jl. -
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Optimization.jl
Mathematical Optimization in Julia
Optimization.jl provides the easiest way to create an optimization problem and solve it. It enables rapid prototyping and experimentation with minimal syntax overhead by providing a uniform interface to >25 optimization libraries, hence 100+ optimization solvers encompassing almost all classes of optimization algorithms such as global, mixed-integer, non-convex, second-order local, constrained, etc. It allows you to choose an Automatic Differentiation (AD) backend by simply passing an... -
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Vizzu
Library for animated data visualizations and data stories
Vizzu is a free, open-source Javascript/C++ library utilizing a generic dataviz engine that generates many types of charts and seamlessly animates between them. It can be used to create static charts but more importantly, it is designed for building animated data stories and interactive explorers as Vizzu enables showing different perspectives of the data that the viewers can easily follow due to the animation. Create a placeholder element that will contain the rendered chart. The Vizzu... -
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PhysicalConstants.jl
Collection of fundamental physical constants with uncertainties
PhysicalConstants.jl provides common physical constants. They are defined as instances of the new Constant type, which is a subtype of AbstractQuantity (from Unitful.jl package) and can also be turned into Measurement objects (from Measurements.jl package) at request. Constants are grouped into different submodules so that the user can choose different datasets as needed. Currently, 2014 and 2018 editions of CODATA recommended values of the fundamental physical constants are provided. -
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Gaston.jl
A julia front-end for gnuplot
Gaston is a Julia package for plotting. It provides an interface to gnuplot, a powerful plotting package available on all major platforms. The current stable release is v1.1.0, and it has been tested with Julia LTS (1.6) and stable (1.8), on Linux. Gaston should work on any platform that runs gnuplot.
