Open Source Linux Data Visualization Software - Page 73

Oplot is a graphical backend for GNU Octave (http://www.octave.org) based on Qt4 (http://qt.nokia.com) library.

Project moved to https://github.com/ivandeex/optikus

Optimization.jl provides the easiest way to create an optimization problem and solve it. It enables rapid prototyping and experimentation with minimal syntax overhead by providing a uniform interface to >25 optimization libraries, hence 100+ optimization solvers encompassing almost all classes of optimization algorithms such as global, mixed-integer, non-convex, second-order local, constrained, etc. It allows you to choose an Automatic Differentiation (AD) backend by simply passing an argument to indicate the package to use and automatically generates the efficient derivatives of the objective and constraints while giving you the flexibility to switch between different AD engines as per your problem. Additionally, Optimization.jl takes care of passing problem-specific information to solvers that can leverage it such as the sparsity pattern of the hessian or constraint jacobian and the expression graph.

A collection of JavaBeans for charting, backed by the popular JFreeChart library.

OrthoInspector is a new software system for orthology/paralogy analysis. Its purpose is to facilitate the installation and the maintenance of a database describing orthology/inparalogy relations and to provide tools to exploit these data.

Orthogonal Diagrammer supporting infinite levels of parenting, smooth interaction when moving nodes

Osprey is a software platform for visualization of complex interaction networks. Osprey builds data-rich graphical represetations from Gene Ontology (GO) annotated interactions maintained by the BioGRID.

Overhead Imagery Research Data Set (OIRDS) - an annotated data library & tools to aid in the development of computer vision algorithms

Ovt'sa is an open source C++ raytracer.

OWL Interactive is a visualization environment to graphically and interactively display contents of OWL ontologies. It represents concept and their interrelationships based on the knowledge representation (KR) primitives defined by OWL ontology language.

PAICE is a rapid bioinformatics pathway visualization tool for KEGG-compatible accessions derived from Illumina Solexa next-gen and Affymetrix datasets. It colors KEGG pathways while appreciating detection-calls and duplicate gene copies.

PANorama is a Linux-compatible, open-source software package for panicle image acquisition, processing, and phenotyping. PANorama 2.0 contains new phenotype measurements and is available for download within the "Files" tab listed above. Installation and user instructions are located within the "Wiki" tab. How to videos are available for streaming at the link below, or for download in the "Files" tab above. Information regarding the project and funding can be found at http://ricediversity.org, and within the corresponding publications and how-to videos: How to videos: http://vimeo.com/cornellricelab PANorama1.0 (Crowell et al. 2014): http://www.plantphysiol.org/content/165/2/479.short PANorama2.0 (Crowell et al. 2016): (http://goo.gl/vQux5Z)

Python library and command line tool to generate maps in PDF format an place objects on them.

PEACH provides C++ functions for programming experiments in visual psychophysics. PEACH contains an extensive collection of visual primitives as well as a set of experimental functions, which allow to code a complicated experiment in a few dozen lines.

PHP Polar Tools is a set of PHP classes for the parsing and management of Polar Heart Rate Monitor data.

PHP::Duploc helps you find duplicate code (a \"bad smell\", prompting a refactoring) in your PHP scripts. By looking for certain patterns in a \"dotplot\" graph, you can visually get a quick overview over a large body of code.

This project aims to provide a PHP class to generate dendrograms, which are used to represent hierarchical clusters

PHPGraphs is a set of graphing classes for php. The basic graph types are line, point, area, and bar. Also, an advanced TimeSeries graph is included. PHPGraphs supports large numbers of large sized data sets.

PIAF (Prototype Image Applications Fast) is a prototyping tool for helping development of image processing algorithms. Based on a Qt GUI, it can display and process several live video inputs or still images with a plugins based architecture.

PIHMgis is a “tightly-coupled” GIS interface to Penn State Integrated Hydrologic Model (PIHM). It is open source, platform independent and extensible. The “tightly-coupled” integrated GIS interface to PIHM has been created in the Open Source QGIS

PIVOT is a simple yet flexible visualization tool based on Circos (Krzywinski et al., 2009), which offers a fast and aesthetical visualization of data and information. The Protein Interaction Visualization and Observation Tool (PIVOT) was developed specifically for the visualization of protein interaction. It is difficult to spot the proteins that have an interaction when given a large list of proteins but with PIVOT, it is easy to identify the them at a glance. PIVOT displays an image showing all the proteins and draws a connection between proteins that have an interaction.

PLOT_PSXPS provides a set of graphic functions that allows the generation of PostScript files (and runtime viewing with X) from C/C++ programs. A page can contain points, lines, arcs, ellipses, circles, boxes, text, included EPS files and a lot more.

3D visualisation of the LHC for the ATLAS project and more specifically for the study of muon detection in the muon spectrometer.

Patched POV-Ray, which allows add to scene new object eisosurface - implicit surface defined in extern dynamic library. Systems: Windows, Linux. Martin Manduch 2008

Architecture for POV-Ray. A set of macros for easy creation of walls, windows, doors, railings and other things useful for building creation.