Search Results for "linux tool" - Page 6
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Showing 353 open source projects for "linux tool"
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COV2HTML
A visualization and analysis tool of Bacterial NGS data for Biologists
COV2HTML provides an easy and 'in home' web interface for biologists that allows coverage visualization of the NGS alignment needed for the analysis. It combines two essential processes: (i) MAP2COV, a tool that converts the huge NGS mapping or coverage files into light specific coverage files which contains genetic elements informations. (ii) COV2HTML, a visualization interface allowing a real-time analysis of data with selected criteria. Thus this interface offers a visualization of NGS... -
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NanoCap
Carbon Fullerene and Capped Nanotube Generator
NanoCap is a generic application for the construction of low energy fullerene and capped nanotube structures. It provides an ideal tool to accompany the study of finite carbon molecules using computer simulation. The implementation involves a standalone application which includes a GUI and allows for dynamic visual inspection through 3D rendering. In addition, the NanoCap core libraries can be used in custom Python scripts that enabled the user to produce structures in bulk or to include the... -
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XNBC: neurobiology simulation tool
XNBC is a graphic application to simulate biologic neural networks.
XNBC is a full featured application for computer naive neuroscientists. It simulates biological neural networks using graphic tools to edit neurons and networks, to run the simulation and to analyze results. Written in C, it runs on Unix and Windows. Web site : http://ticemed-sa.upmc.fr/xnbc/ All recent versions are on this site. -
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CIG-P
CIG-P is a simple yet flexible data visualization tool
CIG-P is a higher order visualization tool for AP-MS which generates intuitive circular diagrams for visually appealing final representation of AP-MS data. CIG-P can be used to compare a) different AP-MS datasets of various baits or b) a particular bait under various perturbations (lenticular section CIG-P). The output of CIG-P is a simple and intuitively easy to grasp visualization of a complex dataset. Publication: CIG-P: Cicular Interaction Graph for... -
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Sage-sb
Semiautomatic generation of semantic building models from image series
We present an approach to generate a 3D model of a building including semantic annotations from image series. In the recent years semantic based modeling, reconstruction of buildings and building recognition became more and more important. Semantic building models have more information than just the geometry, thus making them more suitable for recognition or simulation tasks. The time consuming generation of such models and annotations makes an automatism desirable. Therefore, we present a... -
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Graphical Grammar Studio
An user friendly grammar tool for natural language processing tasks
Full documentation with tutorials is included in the download package. Graphical Grammar Studio is a tool for applying grammars which behave as words acceptors/consumers and annotators. GGS grammars can be used to find and annotate sequences of words which respect certain conditions, in a given input. Its purpose is for creating NLP tools like phrase chunkers, named entity finders, pronoun co-reference solvers etc. A grammar is represented by a state machine which can be visualized, edited... -
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TrafficModeller is an open-source, graphical user interface (GUI) tool for the rapid high-level modeling and generation of vehicular traffic. TrafficModeler supports a variety of traffic definition models representing a wide range of traffic patterns
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mhGui
A gui for linux users of miniHomer, a GPS tracker
miniHomer is a GPS tracker based on a skyTraq GPS chip. This tools helps you to manage the device if you use Linux as your favourite Operating System. As the tool is written in QT/jquey/HTML/javascript, there is a good change that it will run on other OSes. Version 1.0 should be good enough to be offered to the public Please see the files section for RPM packages -
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bnns
Research tool for interactive training of artificial neural networks.
BNNS is a research tool for interactive training of artificial neural networks based on the Response Function Plots visualization method. It enables users to simulate, visualize and interact in the learning process of a Multi-Layer Perceptron on tasks which have a 2D character. Tasks like the famous two-spirals task or classification of satellite image data. -
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Scenario Editor And Visualizer
Scenario Editing and Visualization tool for Scientific scenes
Software Assistive Systems supporting visualization, simulation with aid of virtual reality could possibly enhance the experience and thereby enhance the speed and characteristics of the learning process. For the inclusive systems this means to make the best use of all interfaces human beings are blessed with taken from visualization, touch, voice, smell and taste. The right blend between visualization, simulation and virtual reality could hold the key to a solution. With reduced costs and... -
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Nuclei
Feature rich GUI for nuclear decay schemes
Nuclei is a software tool for the displaying of nuclear decay schemes and estimated energy spectra, the calculation of angular γ emission anisotropies, and the automated search for appropriate decay cascade properties. It uses the Evaluated Nuclear Structure Data Files (ENSDF). A description of Nuclei's functionality and results obtained using its search method was published in Nuclear Instruments and Methods in Physics Research, Section A: M. Nagl, et al., NIM A 726 (2013),... -
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IMPORTANT NOTICE: This project has moved to GitHub: https://github.com/sarahtattersall/PIPE Releases will be posted here, but please check on GitHub for the most recent activity. Create, model and analyse Petri nets with a standards-compliant Petri net tool. PIPE2 is the active fork of the Platform Independent Petri net Editor project, which originated at Imperial College London.
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ViSEN
Visualization tool for statistical epistasis networks
The objective of this project is to provide a graphical visualization for statistical epistasis. Pairwise and three-way epistatic interactions are measured using information gain and are represented using networks. -
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WaveSorter
A powerful, versatile tool for offilne spike analysis and sorting
WaveSorter emphasizes dynamic visualization and versatility. Slider controls let the user select any coefficient or sample from any of several transforms, which can then be plotted to either axis of a 2D histogram (scatterplot). Within the waveform space, cursor-based controls let the user select subregions of the waveform space or individual waveforms to view. The user may cluster waveforms manually or via one of several popular clustering programs. The classification along with waveform... -
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ns-2 Trace Toolkit
This toolkit allows you to analyze and validate ns-2 traces
ns-2 Trace Toolkit was developed to help users to manage and debug ns-2 trace files. It is particularly useful for users that generate ns-2 trace files with other tools such as VanetMobiSim or SUMO (Simulation of Urban Mobility). With ns-2 Trace Toolkit, users can debug their trace files by generating histograms for: (1) node speed, (2) node x-position, and (3) node y-position. These histograms can give hits about concentration of nodes. Additionally, the tool allows users to simulate... -
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PHP tool to display graphs and stats based on temperature readings stored in MySQL from 1-wire or any source of data. Also supports alarms, mobile access, and logging data from digitemp. Works in any browser.
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hyperforms
Hyperforms is a visualisation tool for multi-dimensional objects and f
hyperforms is a visualisation tool for multi-dimensional objects and forms. They are projected into a 3D-Space by different methods of Projection. Currently a cell-first projection is implemented. Hyperforms aims at architectural experiments to create computer driven designs. --- The Project is in Research and not ready to use. --- -
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Dynagraph is a cross-platform library and command-line tool for dynamically drawing graphs (networks, flowcharts, family trees, etc.) in reponse to continual modifications. Included are DynaDAG for directed graphs and FDP force-directed placement.
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PIVOT
PIVOT is a simple yet flexible visualization data tool
PIVOT is a simple yet flexible visualization tool based on Circos (Krzywinski et al., 2009), which offers a fast and aesthetical visualization of data and information. The Protein Interaction Visualization and Observation Tool (PIVOT) was developed specifically for the visualization of protein interaction. It is difficult to spot the proteins that have an interaction when given a large list of proteins but with PIVOT, it is easy to identify the them at a glance. PIVOT displays an image... -
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flNeuronTool
A Fast Light Neuron Tracing and Editor Tool
The flNeuronTool allows users to reconstruct and proofread neuronal morphologies in light microscopy images. The system incorporates automatic tracing and manual editing of neuron reconstruction into a cooperative 3D interactive visualization-assisted environment, which is a powerful tool for analysis of complex neuronal images. -
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charterix
Web based Chart calculation Tool
Calculate and create Charts Web based with real PHP Code and its Math Functions. Develope in Groups with detailed User Permissions or alone, for study purposes or just for fun. Score good Charterix Projects to bring them under the top ten. A Test-Run is available here: http://charterix.sourceforge.net -
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ValiTerms
Validation of terms in corpus
ValiTerms is a tool that helps the validation of terms in corpus. It finds their occurrences and allows terminologists to choose if a term is relevant or not. ValiTerms is developed at LIPN (http://www-lipn.univ-paris13.fr), RCLN team. Please consult the wiki for instructions about installation and usage. -
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ViNSS View
Vienna Notation Secondary Structure Viewer
ViNSS View is a highly flexible tool for drawing RNA secondary structures. Secondary structures can be visualized as classical secondary structure plot, circle plot, linear plot or mountain plot. ViNSS View allows manual editing and several drawing styles, as well as a fully automated conjugate gradients minimization approach to draw more complex structures without user interaction. In addition, ViNSS View allows you to incorporate non-canonical base pairs into your drawing. -
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Matlab tool for plotting multi-channel biomedical signals. It is designed for researchers on both engineering and medicine who have to collaborate to visualize and analyze signals. It is the ideal tool to plot electroencephalogram (EEG), Foetal Heart Rate (FHR) and many other signals with the standard tools used in clinical routine.
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