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CounterfactualExplanations.jl
A package for Counterfactual Explanations and Algorithmic Recourse
CounterfactualExplanations.jl is a package for generating Counterfactual Explanations (CE) and Algorithmic Recourse (AR) for black-box algorithms. Both CE and AR are related tools for explainable artificial intelligence (XAI). While the package is written purely in Julia, it can be used to explain machine learning algorithms developed and trained in other popular programming languages like Python and R. See below for a short introduction and other resources or dive straight into the docs. -
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MIRT.jl
MIRT: Michigan Image Reconstruction Toolbox (Julia version)
MIRT.jl is a collection of Julia functions for performing image reconstruction and solving related inverse problems. It is very much still under construction, although there are already enough tools to solve useful problems like compressed sensing MRI reconstruction. Trying the demos is a good way to get started. The documentation is even more still under construction. -
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Functors.jl
Parameterise all the things
Functors.jl provides tools to express a powerful design pattern for dealing with large/ nested structures, as in machine learning and optimization. For large machine learning models, it can be cumbersome or inefficient to work with parameters as one big, flat vector, and structs help manage complexity; but it is also desirable to easily operate over all parameters at once, e.g. for changing precision or applying an optimizer update step. -
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Parquet.jl
Julia implementation of Parquet columnar file format reader
A parquet file or dataset can be loaded using the read_parquet function. A parquet dataset is a directory with multiple parquet files, each of which is a partition belonging to the dataset. -
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IntervalRootFinding.jl
Find all roots of a function in a guaranteed way with Julia
This package provides guaranteed methods for finding roots of functions, i.e. solutions to the equation f(x) == 0 for a function f. To do so, it uses methods from interval analysis, using interval arithmetic from the IntervalArithmetic.jl package by the same authors. The basic function is roots. A standard Julia function and an interval is provided and the roots function return a list of intervals containing all roots of the function located in the starting interval. -
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FinEtools.jl
Finite Element tools in Julia
FinEtools is a package for basic operations on finite element meshes: Construction, modification, selection, and evaluation of quantities defined on a mesh. Utilities are provided for maintaining mesh-based data (fields), for defining normals and loads, for working with physical units and coordinate systems, and for integrating over finite element meshes. -
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MethodOfLines.jl
Automatic Finite Difference PDE solving with Julia SciML
MethodOfLines.jl is a Julia package for automated finite difference discretization of symbolically defined PDEs in N dimensions. It uses symbolic expressions for systems of partial differential equations as defined with ModelingToolkit.jl, and Interval from DomainSets.jl to define the space(time) over which the simulation runs. This project is under active development, therefore the interface is subject to change. The docs will be updated to reflect any changes, please check back for current... -
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Tulip.jl
Interior-point solver in pure Julia
Tulip is an open-source interior-point solver for linear optimization, written in pure Julia. It implements the homogeneous primal-dual interior-point algorithm with multiple centrality corrections and therefore handles unbounded and infeasible problems. Tulip’s main feature is that its algorithmic framework is disentangled from linear algebra implementations. This allows to seamless integration of specialized routines for structured problems. -
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Conda.jl
https://github.com/JuliaPy/Conda.jl
This package allows one to use conda as a cross-platform binary provider for Julia for other Julia packages, especially to install binaries that have complicated dependencies like Python. conda is a package manager that started as the binary package manager for the Anaconda Python distribution, but it also provides arbitrary packages. Instead of the full Anaconda distribution, Conda.jl uses the miniconda Python environment, which only includes conda and its dependencies. -
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CoordinateTransformations.jl
A fresh approach to coordinate transformations
CoordinateTransformations is a Julia package to manage simple or complex networks of coordinate system transformations. Transformations can be easily applied, inverted, composed, and differentiated (both with respect to the input coordinates and with respect to transformation parameters such as rotation angle). Transformations are designed to be light-weight and efficient enough for, e.g., real-time graphical applications, while support for both explicit and automatic differentiation makes... -
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Coluna.jl
Branch-and-Price-and-Cut in Julia
Coluna is a branch-and-price-and-cut framework written in Julia. You write an original MIP that models your problem using the JuMP modeling language and our specific extension BlockDecomposition offers a syntax to specify the problem decomposition. Then, Coluna reformulates the original MIP and optimizes the reformulation using the algorithms you choose. Coluna aims to be very modular and tweakable so that you can define the behavior of your customized branch-and-price-and-cut algorithm. -
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InfiniteOpt.jl
An intuitive modeling interface for infinite-dimensional optimization
A JuMP extension for expressing and solving infinite-dimensional optimization problems. InfiniteOpt.jl provides a general mathematical abstraction to express and solve infinite-dimensional optimization problems (i.e., problems with decision functions). Such problems stem from areas such as space-time programming and stochastic programming. InfiniteOpt is meant to facilitate intuitive model definition, automatic transcription into solvable models, permit a wide range of user-defined... -
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Books.jl
Create books with Julia
In a nutshell, this package is meant to generate books (or reports or dashboards) with embedded Julia output. Via Pandoc, the package can live serve a website and build various outputs including a website and PDF. For many standard output types, such as DataFrames and plots, the package can run your code and will automatically handle proper embedding in the output documents, and also try to guess suitable captions and labels. Also, it is possible to work via the live server, which shows... -
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GPUArrays
Reusable array functionality for Julia's various GPU backends
Reusable GPU array functionality for Julia's various GPU backends. This package is the counterpart of Julia's AbstractArray interface, but for GPU array types: It provides functionality and tooling to speed-up development of new GPU array types. This package is not intended for end users! Instead, you should use one of the packages that builds on GPUArrays.jl, such as CUDA.jl, oneAPI.jl, AMDGPU.jl, or Metal.jl. -
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Surrogates.jl
Surrogate modeling and optimization for scientific machine learning
A surrogate model is an approximation method that mimics the behavior of a computationally expensive simulation. In more mathematical terms: suppose we are attempting to optimize a function f(p), but each calculation of f is very expensive. It may be the case we need to solve a PDE for each point or use advanced numerical linear algebra machinery, which is usually costly. The idea is then to develop a surrogate model g which approximates f by training on previous data collected from... -
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Metalhead.jl
Computer vision models for Flux
Metalhead.jl provides standard machine learning vision models for use with Flux.jl. The architectures in this package make use of pure Flux layers, and they represent the best practices for creating modules like residual blocks, inception blocks, etc. in Flux. Metalhead also provides some building blocks for more complex models in the Layers module. -
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Graphs.jl
An optimized graphs package for the Julia programming language
The goal of Graphs.jl is to offer a performant platform for network and graph analysis in Julia, following the example of libraries such as NetworkX in Python. Offers a set of simple, concrete graph implementations – SimpleGraph (for undirected graphs) and SimpleDiGraph (for directed graphs), an API for the development of more sophisticated graph implementations under the AbstractGraph type, and a large collection of graph algorithms with the same requirements as this API. -
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DataFramesMeta.jl
Metaprogramming tools for DataFrames
Metaprogramming tools for DataFrames.jl objects to provide more convenient syntax. DataFrames.jl has the functions select, transform, and combine, as well as the in-place select! and transform! for manipulating data frames. DataFramesMeta.jl provides the macros @select, @transform, @combine, @select!, and @transform! to mirror these functions with more convenient syntax. Inspired by dplyr in R and LINQ in C#. -
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ApproxFun.jl
Julia package for function approximation
ApproxFun is a package for approximating functions. It is in a similar vein to the Matlab package Chebfun and the Mathematica package RHPackage. The ApproxFun Documentation contains detailed information, or read on for a brief overview of the package. The documentation contains examples of usage, such as solving ordinary and partial differential equations. The ApproxFun Examples repo contains many examples of using this package, in Jupyter notebooks and Julia scripts. Note that this is... -
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OnlineStats.jl
Single-pass algorithms for statistics
OnlineStats does statistics and data visualization for big/streaming data via online algorithms. High-performance single-pass algorithms for statistics and data viz. Updated one observation at a time. Algorithms use O(1) memory. Algorithms use O(1) memory. -
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Oceananigans.jl
Julia software for fast, friendly, flexible fluid dynamics on CPUs
Oceananigans is a fast, friendly, flexible software package for finite volume simulations of the nonhydrostatic and hydrostatic Boussinesq equations on CPUs and GPUs. It runs on GPUs (wow, fast!), though we believe Oceananigans makes the biggest waves with its ultra-flexible user interface that makes simple simulations easy, and complex, creative simulations possible. -
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Pluto.jl
Simple reactive notebooks for Julia plutojl.org
We are on a mission to make scientific computing more accessible and fun. Writing a notebook is not just about writing the final document, Pluto empowers the experiments and discoveries that are essential to getting there. -
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Run Page
Make your own running home page
GitHub Actions manages automatic synchronization of runs and generation of new pages. Gatsby-generated static pages, fast. Support for Vercel (recommended) and GitHub Pages automated deployment. React Hooks. Mapbox for map display. Supports most sports apps such as nike strava. Automatically backup gpx data for easy backup and uploading to other software. -
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ggstatsplot
Enhancing {ggplot2} plots with statistical analysis
{ggstatsplot} is an extension of {ggplot2} package for creating graphics with details from statistical tests included in the information-rich plots themselves. In a typical exploratory data analysis workflow, data visualization and statistical modeling are two different phases: visualization informs modeling, and modeling in its turn can suggest a different visualization method, and so on and so forth. Bayesian hypothesis-testing. The central idea of {ggstatsplot} is simple: combine these... -
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classic.tplx
A more accurate representation of jupyter notebooks
A more accurate representation of Jupyter notebooks when converting to pdfs. This template was designed to make converted Jupyter notebooks look (almost) identical to the actual notebook. If something doesn't exist in the original notebook then it doesn't belong in the conversion. As of nbconvert 5.5.0, the majority of these improvements have been merged into nbconvert's default template. Version 3.x of this package will continue to support nbconvert 5.5.0 and lower, whereas in the future...
