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MicroArray Genome Imaging and Clustering Tool (MAGIC tool) is a platform-independant java program for analyzing MicroArray data (.tiff scans & .txt godlists) via graphs and clustering operations (including QT-clustering). http://www.bio.davidson.edu/magic
The NEtwork Visualisation Environment is a framework for 3D-visualisation of and interaction with networks, especially communication networks as the internet in both real time and as a simulation tool. Based on JMX/Java3D.
FlowtificX is a scientific workflow modelling, collaboration, execution and tracing tool that allows scientists to concentrate on their science and to alleviate the burden of the complexity of scientific toolsets.
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Object Relational Persistence and Object-Based SQL Query API. Similar to that of Hibernate or JDO but much better structured design. This API has several layers of abstraction to be useful for nearly any situation.
Guided Logic Exercises is a tool that can be used for simplifying logical expressions. It is a java applet that makes use of underlying packages designed for the applet.
GATA is a graphic alignment tool for comparative sequence analysis. It makes use of BLAST to graphically align two DNA sequences, creating box- line- box representations of window scored local alignments. GATA also displays extensive GFF gene annotation.
jpcap is a set of Java classes which provide an interface and system for network packet capture. A protocol library and tool for visualizing network traffic is included.
jpcap utilizes libpcap, a widely deployed system library for packet capture.
Graphl is a generic graph visualization and manipulation tool written in Java. Graphl reads and writes RDF files, visualizes them in a flexible and customizeable way and allows users to edit them intuitively. Please see project homepage for more info...
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WordFreak is a java-based linguistic annotation tool designed to
support human, and automatic annotation of linguistic data as well as
employ active-learning for human correction of automatically annotated
data.
HiSee is a tool for visualizing high dimensional data using one of a variety of projection techniques. A graphical interface is provided for viewing and exploring the projected data.
txtkit is a visual text mining tool for exploring large amounts of multilingual texts. It's an multiuser-application which mainly focuses on the process of reading and reasoning as series of decisions and events.
UMLet is an open-source Java tool for rapidly drawing UML diagrams, with a focus on a sound and pop-up-free user interface. Its homepage is www.umlet.com.
v15.1 released on March 20, 2023.
wlandscape is a tool for collecting access point data of public wireless networks ( wlan ) in order to share it with anyone. It also supports gps and visualisation with the help of topographical maps. Visit our homepage for further informations.
MathGenius is a graphical tool intended to simplify your work in mathematics. By now it includes a graphical function plotter, a mechanism (still in development) to derive functions, and an equation solver. An extension mechanism will be developed.
Rapid Visual OAI Tool (RVOT) can be used to graphically construct a OAI-PMH repository from a collection of files. The records in the original collection can be in any one of the acceptable format. The format currently supported are RFC1807,Marc,COSATI
Atavi is an interactive genealogical data visualization tool. It uses XSLT to transform XML data into SVG (Scable Vector Graphics) images. Deploy it as a Java servlet and explore visualizations from a browser that supports SVG. GEDCOM import is planned.
A java based digital logic simulator, designed to be used as an educational tool.
uses a GUI to allow users to quickly and easily create and visualise circuits from simple components. User can create custom components
OpenLabel is a label placement tool and decluttering algorithm for OpenMap. Labels are placed in full conformance with applicable cartographic specifications and conventions - without overlap or ambiguity.
jVisualizer is a graphical tool to visualize and analyse first-order coppling patterns found in NMR-spectroscopy; additional you can type in chemical shifts from an experiment to calculate coupling constants