GoIFISH
for the semi-automated analysis of IFISH images
...GoIFISH has been developed in MATLAB, however binaries are provided to run the program outside of the MATLAB environment. Source code is also available for download.
To cite this software:
"GoIFISH: A system for the quantification of single cell heterogeneity from IFISH images"
Trinh A, Rye IH, Almendro V, Helland A, Russness HG, Markowetz F
May 2014