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This project moved to GitHub in 2021 and is available at:
https://cbrinkrolf.github.io/VANESA/
This tool is a platform-independent software to create individual pathways and to examine biological networks of distributed, heterogeneous data sources, e.g. KEGG, BRENDA.
VANESA also offers Petri net modeling of extended hybrid Petri nets which can be also simulated using the OpenModelica framework.
Limada (Linked Marked Data) is a framework for managing relationships of data in non-hierarchical structures, where the individual elements are interconnected in complex ways. The philosophy behind: Information is connection, is relationship of data.
The SBMLLayout Project provides libraries and tools for handling layout and render information of SBML Models. Supported are SBML Layout / Render Extension, CellDesigner annotations and JDesigner annotations.
This project hosts the 'Simulation Tool', an extensible, interactive environment for carrying out simulation experiments of SBML models. This project can use RoadRunner or SBW enabled simulators to carry out simulations.
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math lib for .NET. n-dim arrays, complex numbers, linear algebra, FFT, sorting, cells- and logical arrays as well as 3D plotting classes help developing algorithms on every platform supporting .NET. Sources from SVN, binaries: http://ilnumerics.net
displays network protocol headers in uniform RFC like format
Netmate is a GTK+ program that shows network protocols headers in 32-bit aligned fields, identical as they are represented in Request for Comments (RFCs). It can be used to learn and teach about network protocols and to understand their functionality and collaboration.
IMPORTANT NOTICE:
This project has moved to GitHub:
https://github.com/sarahtattersall/PIPE
Releases will be posted here, but please check on GitHub for the most recent activity.
Create, model and analyse Petri nets with a standards-compliant Petri net tool. PIPE2 is the active fork of the Platform Independent Petri net Editor project, which originated at Imperial College London.
Released August 22, 2013
Lubuntu Blends: Biochemistry 13.04 (Raring) v5.44
Linux Kernel Image 3.8.0-29
Lubuntu Blends are pre-installed Wubi disk image remixes of Ubuntu and Debian Science meta packages, A custom boot loader allows installations to be copied and automatically booted from most external or USB flash drives.
Once up and running, use earlier Lubuntu Remix README instructions here until documentation is updated....
Open-source, cross-platform 3D rendering engine for .NET and Mono. The Axiom Engine is a high-performance C# port of the powerful OGRE engine and provides full support for DirectX, OpenGL and XNA on Windows, Linux, Android, iPhone and Windows Phone.
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Free Organic Chemistry Analysis and Visualisation Tool; Chemical formula editor, calculation of threedimensional molecular structures, high-quality realtime rendering, ...
multiDAC is intended to become a user-friendly tool for image- and videoprocessing in the field of deformation/movement analysis. It is written in C# with some C routines using CPU/GPU parallelization (e.g. CUDA) and features a plugin manager.
Visualization of finite state machines as a network graph. Accepted input files at the moment are: net files exported from xfst (Xerox Finite-State Tool) and lexc files (Finite-State Lexicon Compiler).
scada-tgz is a open-source .NET based framework for creating SCADA applications. It includes communication servers for various hardware in form of WebServices and SCADA-specific controls for Windows.Forms, GTK# and ASP.NET applications.
MEM Net - Mote EMulator Network.
This project will focus on:
1) MEM - Wireless Sensor Node (mote) emulator
2) MEM Net - network of emulated motes
So far, the only released package is visual-sim-slides.
More comming next !
It's a program for calculating and visualizing evolutionary processes of cells in multidimensional spaces. Many cellular properties are involved (vitality, lifespan, ethnicity, growth medium), affected by mutation and accidental influences.