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Nounou is a Java library for handling optical imaging data. The core consists of a modular stream of "filter blocks" that each modify or display the data. It is easily called from Mathematica and Matlab, for advanced figure output.
A Matlab based project for tracking cell nuclei in 3D space over time from live imaging data.
(Sample images and lineage data are available under "Files".)
3D medical image platform for visualization and image processing. Segmentation with Levels sets. Surface reconstruction with marching Cubes, texture Mapping and Raycasting,DICOM support. Integration environment for VTK, ITK and vtkInria3D under wxWidgets
Pattern recognition software package. It includes several classification and clustering algorithms. It can read data from a
set of images, an ASCII file or a JDBC connection. A small TCP data server with its corresponding JDBC driver is included.
This library provides an easy interface to Gnuplot (http://www.gnuplot.info/) from OCaml (http://caml.inria.fr/) for static 2D and 3D graphs and simple animations. This library aims to be portable on all platforms OCaml runs on.
A topological data structure to handle 2D, surfaces and 3D simplicial meshes. This data structure is implemented in C++ using templates. It is based on Corner-Table and CGAL data structure.
Unlimited organizations, 3 enterprise SSO connections, role-based access control, and pro MFA included. Dev and prod tenants out of the box.
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OWLViz4U (OWLViz for Unicode) is an extension of OWLViz for supporting Unicode based ontologies, which is an OWL visuliazation tool used with the Protege OWL plugin. OWLViz4U is part of the W3China Open Source Project (http://www.w3china.org).
OO-Widgets is a Java Swing project that makes the JTable and other components much easier to use. This library differs from other Swing libraries in that it displays any set of pre-existing objects or JavaBeans.
Ogles strives to provide an open source data model for neuroscientific data visualization and analytics. Ogles started out as a planning system for frame based stereotactic neurosurgery.
Ogles(1) is discontinued.
Release candidate (RC) is Ogles2b.
Ogles is accompanied by a simple DICOM reader
and NIfTI converting tool (Sdr2).
The Olduvai bioinformatics visualization system allows side by side comparison of:
TreeJuxtaposer: evolutionary trees
SequenceJuxtaposer: genomic sequences
Olex2 is visualisation software for small-molecule crystallography developed at Durham University/EPSRC. It provides comprehensive tools for crystallographic model manipulation for the end user and an extensible development framework for programmers. The project has been supported by Olexsys Ltd since 2010.
OmniGene is a set of reausable components that have been packaged into frameworks. These frameworks are used to produce domain specific services for common bioinformatics tasks including: visualization, database access, and pipeline building.
OntoViz, an ontology browser is an extension of my undergraduate honors thesis. This helps a user browse ontologies using a variety of graph drawing algorithms. The ontology can be specified using a text file, a local/remote database or a web service.
OpStation_Qt: Operator Station for controlling multiple robots/robotics/devices using Player/Stage/Gazebo written using the open Qt GUI libraries. Written in C and C++. A good platform for storing data from scientific experiments as well as recreation
A Open Source project with the main goal to make a simple way to display 3D objects from a Geodatabase (PostgreSQL/PostGIS) on the Web. This project was created by OpenGEO (www.opengeo.com.br).
Open Source Particle Image Velocimetry and PIV Analysis
OpenPIV is an initiative of scientists to develop a software, algorithms and methods for the state-of-the-art experimental tool of Particle Image Velocimetry (PIV) which are free, open source, and easy to operate.
This open-source project aims at creation of a OpenGL 3D stereoscopic algorithms folded as plug-ins into popular 3D modeling and game engine tools, such as Maya, Blender, OGRE, and others.
Open Worlds VR is a general, visual and interactive simulation platform, designed to support thousands of independent actors (objects). It also implements a strong peer-to-peer networking algorithm to allow multi-computer processing of a single large simu
A project to develop open and free data exchanging interfaces and user interfaces (data readers, writers, plugins, converters, graphic user interfaces, etc) for open source CAE solvers and pre/postprocessors.