Search Results for "properties"
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Showing 38 open source projects for "properties"
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MolecularGraph.jl
Graph-based molecule modeling toolkit for cheminformatics
MolecularGraph.jl is a graph-based molecule modeling and chemoinformatics analysis toolkit fully implemented in Julia. -
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Matplotlib
matplotlib: plotting with Python
Matplotlib is a comprehensive library for creating static, animated, and interactive visualizations in Python. Matplotlib makes easy things easy and hard things possible. Matplotlib ships with several add-on toolkits, including 3D plotting with mplot3d, axes helpers in axes_grid1 and axis helpers in axisartist. A large number of third party packages extend and build on Matplotlib functionality, including several higher-level plotting interfaces (seaborn, HoloViews, ggplot, ...), and a... -
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Distributions.jl
A Julia package for probability distributions and associated functions
A Julia package for probability distributions and associated functions. -
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kotlin-math
Set of Kotlin APIs to make graphics math easier to write.
Set of Kotlin APIs to make graphics math easier to write. These APIs are mostly modeled after GLSL (OpenGL Shading Language) to make porting code to and from shaders easier. The various types offered by this library are only meant to be value types. Most APIs are therefore exposed as top-level functions and not as methods. -
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Molly.jl
Molecular simulation in Julia
Much of science can be explained by the movement and interaction of molecules. Molecular dynamics (MD) is a computational technique used to explore these phenomena, from noble gases to biological macromolecules. Molly.jl is a pure Julia package for MD, and for the simulation of physical systems more broadly. The package is described in a talk at Enzyme Conference 2023 and an earlier talk at the JuliaMolSim minisymposium at JuliaCon 2022. Slides are also available for a tutorial in September... -
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Clapeyron
Framework for the development and use of fluid-thermodynamic models
Welcome to Clapeyron! This module provides both a large library of thermodynamic models and a framework for one to easily implement their own models. Clapeyron provides a framework for the development and use of fluid-thermodynamic models, including SAFT, cubic, activity, multi-parameter, and COSMO-SAC. -
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Observable Plot
A concise API for exploratory data visualization
...In the spirit of show don’t tell, below is a scatterplot of the height and weight of Olympic athletes (sourced from Matt Riggott), constructed using a dot mark. We assign columns of data (such as weight) to visual properties (such as the dot’s x), and Plot infers the rest. You can configure much more, if needed, but Plot’s goal is to help you get a meaningful visualization quickly. Plot employs a layered grammar of graphics inspired by Vega-Lite, ggplot2, Wilkinson’s Grammar of Graphics, and Bertin’s Semiology of Graphics. Plot rejects a chart typology in favor of marks, scales, and transforms. ... -
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LossFunctions.jl
Julia package of loss functions for machine learning
...It is thus intended to serve as a special purpose back-end for other ML libraries that require losses to accomplish their tasks. To that end we provide a considerable amount of carefully implemented loss functions, as well as an API to query their properties (e.g. convexity). Furthermore, we expose methods to compute their values, derivatives, and second derivatives for single observations as well as arbitrarily sized arrays of observations. In the case of arrays a user additionally has the ability to define if and how element-wise results are averaged or summed over. -
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ProbabilisticCircuits.jl
Probabilistic Circuits from the Juice library
...PCs are represented as computational graphs that define a joint probability distribution as recursive mixtures (sum units) and factorizations (product units) of simpler distributions (input units). Given certain structural properties, PCs enable different range of tractable exact probabilistic queries such as computing marginals, conditionals, maximum a posteriori (MAP), and more advanced probabilistic queries. -
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libsombrero
Astronomical object/structure detection from 1D and 2D data sets.
Sombrero is a fast wavelet image processing and object detection C library for astronomical images. Sombrero is named after the "Mexican Hat" shape of the wavelet masks used in image convolution and is released under the GNU LGPL library. -
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Charmol
Program for molecular graphics
...Charmol is capable of making pictures containing: - from small- to large-size molecules - more molecules together (different settings possible) - orbitals using molden and fchk files (GTO functions up to 'h' angular momentum supported) - surfaces using gaussian cube files (also color-mapped surfaces according to potential) - schematic representation of vibrations using arrows - user-defined arrows representing vectorial properties - measuring gauges - combinations of these features (more orbitals together, orbitals and arrows together etc.) Charmol allows for fine tuning of the final molecular design. -
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PeriodicTable.jl
Periodic Table for Julians
A very simple package for accessing elements in the Periodic Table. PeriodicTable.jl provides a Julia interface to a small database of element properties for all of the elements in the periodic table. In particular PeriodicTable exports a global variable called elements, which is a collection of Element data structures. -
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ipyvolume
3d plotting for Python in the Jupyter notebook
...Render in stereo, for virtual reality with Google Cardboard. Animate in d3 style, for instance, if the x coordinates or color of a scatter plots changes. Animations / sequences, all scatter/quiver plot properties can be a list of arrays, which can represent time snapshots. -
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TexGen is a geometric textile modelling software package to be used for obtaining engineering properties of woven textiles and textile composites. Citing TexGen We would be grateful if you could acknowledge use of TexGen where appropriate and suggest using one of the following references: L P Brown and A C Long. "Modelling the geometry of textile reinforcements for composites: TexGen", Chapter 8 in "Composite reinforcements for optimum performance (Second Edition)", ed. ...
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GPlates
Interactive visualization of plate tectonics.
GPlates is a plate-tectonics program. Manipulate reconstructions of geological and paleo-geographic features through geological time. Interactively visualize vector, raster and volume data. PyGPlates is the GPlates Python library. Get fine-grained access to GPlates functionality in your Python scripts. -
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graphdot
Visualize Go module dependencies in Graphviz DOT format
...For large graphs with many nodes of dependencies, you may want to generate an SVG file to allow you to zoom in with high fidelity and save disk space instead. If you like a more UML'ish style, you can use the provided graph properties from uml.gprops. -
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React-Vis
Data visualization components
...React-Vis charts are made of Series components, LineSeries, BarSeries and so on and so forth. Each of these Series components requires a data property, through which we pass an array of objects. These properties correspond to various visual characteristics of the corresponding marks. For example, x and y, which are required for most series types, affect the position of each mark. -
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xeogl
A WebGL-based 3D engine for technical visualization
...Transform hierarchies. Bounding volumes. 3D picking, raycasting. Screen capture. You can dynamically edit most things in your scene at runtime. Animate your scenes by updating the properties of their components. Load 3D models into your scene from glTF. -
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Interactable
Experimental implementation of high performance interactable views
...Chat heads (a la Facebook Messenger) that can be dragged around but snap to corners of the screen. All of these use-cases have views that continuously interact with the user's gestures. These interactions are normally physical in nature, having properties like springiness, friction, elasticity and damping. In order to feel natural on a touch device they need to run at 60 FPS. -
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irayMol
Molecular visualization
Analyses and Interactive visualizations of the structures, functions and actions of biomolecules including molecular surface computation, and protein-ligand interface and protein-ligand docking where the ligand could a small compound, a nucleic acid, membrane and other proteins, written in C++/Qt/openGL/GLSL with more than 125,000 lines of codes. In addition to Qt, the only external library needed is GSL everything else is coded from the scratch. -
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React Trend
Simple, elegant spark lines
...These are very simple and elegant visualizations, and they should not require a bloated graphing library to produce. React Trend is a concrete component that does 1 thing, and does it well, generate these trending graphs. By default, all properties not recognized by React Trend will be delegated to the SVG. The line inherits these properties if none of its own override them. -
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Glimpse Plotting Library
WPF Plotting Library
...It currently contains five classes: a scatter plot, a line graph, an histogram, a raster plot to display matrix data and a tree plot to visualize recursive XML data. Main attributes can be customized through the respective constructors, additional changes are available through public properties. To use the packaged classes just reference the library in your project, instantiate a new plot and add it to a display container of your choice. -
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GoIFISH
for the semi-automated analysis of IFISH images
GoIFISH has been developed for the analysis of IFISH (Immunofluorescence + Fluorescence in situ Hybridisation) images, performing nuclear, membrane and spot detection. Users can manually edit segmentation results, perform background adjustments, construct heatmaps, topology maps, and perform cell classification. All results can be exported for further analysis. GoIFISH has been developed in MATLAB, however binaries are provided to run the program outside of the MATLAB environment.... -
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This is a collection of (hopefully) useful productivity enhancements of Mentor Graphics IC-Station tools
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WebChemViewer
A simple program for sharing molecular structures with associated data
Sharing lists of molecular structures with associated chemical properties is a common task in computer-aided drug design and medicinal chemistry. WebChem Viewer is a simple, free, open-source program that generates HTML-formatted output that can be viewed in any modern web browser, on any operating system (including mobile), without requiring the installation of additional software. The output can also be easily incorporated into existing web pages.
