Search Results for "b-processor"
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Showing 36 open source projects for "b-processor"
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BasicBSpline.jl
Basic (mathematical) operations for B-spline functions
Basic (mathematical) operations for B-spline functions and related things with Julia. -
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Interpolations.jl
Fast, continuous interpolation of discrete datasets in Julia
This package implements a variety of interpolation schemes for the Julia language. It has the goals of ease of use, broad algorithmic support, and exceptional performance. Currently, this package supports B-splines and irregular grids. The API has been designed with the intent to support more options. Initial support for Lanczos interpolation was recently added. Pull requests are more than welcome! It should be noted that the API may continue to evolve over time. -
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VimBindings.jl
Vim bindings for the Julia REPL
Vim bindings for the Julia REPL. VimBindings.jl is a Julia package which brings vim emulation directly to the Julia REPL. -
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HCubature.jl
Pure-Julia multidimensional h-adaptive integration
The HCubature module is a pure-Julia implementation of multidimensional "h-adaptive" integration. then hcubature(f, a, b) computes the integral, adaptively subdividing the integration volume into smaller and smaller pieces until convergence is achieved to the desired tolerance (specified by optional rtol and atol keyword arguments. Because hcubature is written purely in Julia, the integrand f(x) can return any vector-like object (technically, any type supporting +, -, * real, and norm: a Banach space). ... -
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Roots.jl
Root finding functions for Julia
...The basic call is find_zero(f, x0, [M], [p]; kws...) where, typically, f is a function, x0 a starting point or bracketing interval, M is used to adjust the default algorithms used, and p can be used to pass in parameters. Bisection-like algorithms. For functions where a bracketing interval is known (one where f(a) and f(b) have alternate signs), a bracketing method, like Bisection, can be specified. The default is Bisection, for most floating point number types, employed in a manner exploiting floating point storage conventions. For other number types (e.g. BigFloat), an algorithm of Alefeld, Potra, and Shi is used by default. These default methods are guaranteed to converge. ... -
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QuadGK.jl
adaptive 1d numerical Gauss–Kronrod integration in Julia
...The package provides three basic functions: quadgk, gauss, and kronrod. quadgk performs the integration, gauss computes Gaussian quadrature points and weights for integrating over the interval [a, b], and kronrod computes Kronrod points, weights, and embedded Gaussian quadrature weights for integrating over [-1, 1]. -
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Excel to Graphviz
Free Excel tool to easily create Graphviz data visualizations.
The Excel to Graphviz Relationship Visualizer spreadsheet transforms your Excel data into professional Graphviz diagrams. Enter simple "A is related to B" rows to instantly generate polished relationship graphs using the Graphviz DOT language. Ideal for data analysis, network visualization, and IT architecture. Free, open-source, MIT-licensed. Customize the look of nodes, edges, and clusters with the Style Designer. Build a CSS-like gallery of reusable styles that lets you apply consistent visual themes. ... -
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This project delivers Linux support (USB driver and Tools) for a Digital Signal Processor (DSP) cards of the Signal Ranger series, see http://www.softdb.com/product_dsp.shtml for details) connected to a Linux host via USB.
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ReViMS
ReViMS, a 3D volume rendering tool for light-sheet/confocal microscopy
...ReViMS requires a z-stack of 2D binary masks, obtained by segmenting a sequence of fluorescent images acquired by scanning the aggregate along the z axis, using a confocal or a light-sheet fluorescent microscope. It provides a number of tools for: (a) segmenting z-stacks of fluorescence images; (b) reconstructing the 3D surface of the aggregates and estimating several features (including the volume). ReViMS is written in MATLAB (The MathWorks, Inc., Massachusetts, USA). It is an open-source tool and the source code is freely available at: http://sourceforge.net/p/revims Requirements: MATLAB R2017b and Image Processing Toolbox 10.1 or later versions. -
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ReViSP
ReViSP, a 3D volume rendering MATLAB tool for multicellular spheroids
...Piccinini, et al., Cancer multicellular spheroids: Volume assessment from a single 2D projection. Computer Methods and Programs in Biomedicine, 118(2):95–106, 2015. (b) F. Piccinini, et al., Single-image based methods used for non-invasive volume estimation of cancer spheroids: a practical assessing approach based on entry-level equipment. Computer Methods and Programs in Biomedicine, 135:51-60, 2016. -
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Reexport.jl
Julia macro for re-exporting one module from another
Maybe you have a module X that depends on module Y and you want using X to pull in all of the symbols from Y. Maybe you have an outer module A with an inner module B, and you want to export all of the symbols in B from A. It would be nice to have this functionality built into Julia, but we have yet to reach an agreement on what it should look like. This short macro is a stopgap we have a better solution. -
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LightGraphs
An optimized graphs package for the Julia programming language
LightGraphs offers both (a) a set of simple, concrete graph implementations -- Graph (for undirected graphs) and DiGraph (for directed graphs), and (b) an API for the development of more sophisticated graph implementations under the AbstractGraph type. The project goal is to mirror the functionality of robust network and graph analysis libraries such as NetworkX while being simpler to use and more efficient than existing Julian graph libraries such as Graphs.jl. It is an explicit design decision that any data not required for graph manipulation (attributes and other information, for example) is expected to be stored outside of the graph structure itself. ... -
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DICOM Image Reader
A minimal Medical application to read and view DICOM (dcm) image file
...It can load data in DICOM format (single image dcm) and provides standard tools for its manipulation such as contrast, zoom, drag, possibility to draw regions on top of the image and imaging filters such as threshold and sharpening. It is based DWV JavaScript opensource library. =============== Requirements: - Processor: Intel Pentium 4 processor or later that's SSE2 capable - RAM: 512 MB - Hard Disk: 1500 MB - Video Card: nVidia, ATI and Intel Shader Model 2 and Shader Model 3 video cards with 512 megabytes of RAM minimum - Supported OS: Windows 10, Windows 8, Windows 8.1, Windows 7 =============== Alternative software for Windows: Available on Ecwid - https://goo.gl/twBcAq =============== Android App: https://goo.gl/i4NX9K -------------- Chrome app Release Pro: https://goo.gl/p456N5 -
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D_2D and D_3D are plotting programs with unique features, useful for data visualization and analysis. Input data should be provided as ASCII files formatted as x,y pairs or x,y,z triplets. Graphic output can be in DXF vector format, or raster image.
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EntOpt Layout
Relative entropy optimization network layout plugin
The goal of this project is to implement a graph layout / network visualization algorithm as a Java plugin for Cytoscape (http://cytoscape.org/), using a recently published relative entropy optimization based method, called Unified Data Representation (Kovács IA et al. Sci Rep. 2015). If you are using the plugin, please cite: Ágg B, Császár A, Szalay-Bekő M, Veres DV, Mizsei R, Ferdinandy P, Csermely P and Kovács IA (2019) The EntOptLayout Cytoscape plug-in for the efficient visualization of major protein complexes in protein-protein interaction and signalling networks, Bioinformatics 35(21):4490-4492 https://academic.oup.com/bioinformatics/article/35/21/4490/5475596 Our detailed Tutorial on the use of the plugin: https://suopte.com/entopt_2_1_tutorial_20200518.pdf A video about the version 2.1: http://suopte.com/entopt_2_1_tutorial_video.mp4 Don't hesitate to send any questions, comments or bug reports also to agg.bence {at} med.semmelweis-univ.hu. -
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A spring-based 3D graph layout tool written in Java. Rendering is performed in OpenGL via the JOGL library.
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Cartes
For all kinds of geometry transformations of molecules and crystals
功能： A. 晶体坐标变换 -分数坐标和直角坐标互转 -向ａ,ｂ,ｃ三个方向堆积i,j,k个晶胞 -按给定对称关系得出所有相关原子 -按空间群对称性由不等价原子推出晶胞内所有原子 -查看空间群信息及对称等价位置 -自动转换*.cif文件 B. 分子坐标变换 -按指定对称操作任意平移、旋转、反映或反演当前的坐标 - 将一组坐标的中心平移到原点 -自动点群识别 -自动调整分子取向，包括 1)自动将分子的主轴调整到x,y,z轴上 2)自动将分子的自定义的某个轴调整到自定义的另外一个轴上 C. 各种文件格式的转换 注：Windows Vista使用注意：将cartes.exe的兼容模式改成Windows XP，并从用“管理员运行模式” -
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wxRays
Visual x-ray data processor
Visual x-ray data processor. The routine, writed in Python using wxPython, NumPy, SciPy and mathplotlib libraries for practical and educational purpose. -
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...ADOMA is a commandline program that can easily be used in pipelines. For more information check the README.md in the Files section. How to cite ADOMA: Zaal, D. and Nota, B. (2016), ADOMA: A Command Line Tool to Modify ClustalW Multiple Alignment Output. Mol. Inf., 35: 42–44. doi: 10.1002/minf.201500083 http://onlinelibrary.wiley.com/doi/10.1002/minf.201500083/abstract
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CIG-P
CIG-P is a simple yet flexible data visualization tool
CIG-P is a higher order visualization tool for AP-MS which generates intuitive circular diagrams for visually appealing final representation of AP-MS data. CIG-P can be used to compare a) different AP-MS datasets of various baits or b) a particular bait under various perturbations (lenticular section CIG-P). The output of CIG-P is a simple and intuitively easy to grasp visualization of a complex dataset. Publication: CIG-P: Cicular Interaction Graph for Proteomics http://www.biomedcentral.com/1471-2105/15/344/ Previously known as PIVOT (Protein Interaction Visualization and Observation Tool) -
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Impact is an explicit Finite Element Program Suite which simulates dynamic impact events. It has a range of elements, contact handling and different material laws. Models can be created, solved and analyzed with the included pre- and postprocessor. Impact is based on an Explicit Time stepping algorithm. These kind of codes are used to simulate dynamic phenomena such as car crashes and similar, usually involving large deformations.
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Solvere4D is a powerful, open-source, freely available post-processor that makes it easy for anyone to generate 3D animations of 3D rigid body kinematics and kinetics, with many visualization options.
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Processor and realtime viewer for the program VXFlow (http://www.morgenthal.org/vxflow/), an numerical flow field simulator, written by Prof. Dr. Guido Morgenthal (http://www.uni-weimar.de/Bauing/MSK/?lang=en). This project uses the gloost framework.
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StrawberryFields is a complete nanoscale electromagnetic modelling and data visualization suite. It comprises a vtk based GUI for modelling and data visualization and an extensible object oriented (Multi Processor compatible) back end processor.
