Showing 849 open source projects for "java-legacy"

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    EntOpt Layout

    EntOpt Layout

    Relative entropy optimization network layout plugin

    The goal of this project is to implement a graph layout / network visualization algorithm as a Java plugin for Cytoscape (http://cytoscape.org/), using a recently published relative entropy optimization based method, called Unified Data Representation (Kovács IA et al. Sci Rep. 2015). If you are using the plugin, please cite: Ágg B, Császár A, Szalay-Bekő M, Veres DV, Mizsei R, Ferdinandy P, Csermely P and Kovács IA (2019) The EntOptLayout Cytoscape plug-in for the efficient visualization of major protein complexes in protein-protein interaction and signalling networks, Bioinformatics 35(21):4490-4492 https://academic.oup.com/bioinformatics/article/35/21/4490/5475596 Our detailed Tutorial on the use of the plugin: https://suopte.com/entopt_2_1_tutorial_20200518.pdf A video about the version 2.1: http://suopte.com/entopt_2_1_tutorial_video.mp4 Don't hesitate to send any questions, comments or bug reports also to agg.bence {at} med.semmelweis-univ.hu.
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  • 2
    A spring-based 3D graph layout tool written in Java. Rendering is performed in OpenGL via the JOGL library.
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  • 3

    MusicDNA

    Experience your favorite music in a unique way

    MusicDNA is a music player unlike any other. It is an Android music player that renders beautiful DNA (visualization) of the currently playing music. It does this through the use of the Visualizer Class, and is inspired by paullewis's music-dna. It uses the FFT Data supplied by the Visualizer class of Android , calculating the Amplitude at that exact moment and using this to plot the DNA. MusicDNA fuses the functionality of traditional music players with stunning visualizations. In this...
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  • 4
    Maui

    Maui

    Maui is the Maltcms User Interface

    Maui is the Maltcms User Interface, a rich client application for Chromatography-Mass Spectrometry and related research areas.
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    Egonet is a program for the collection and analysis of egocentric network data. It helps you create the questionnaire, collect data, and provide general global network measures and data matrixes that can be used for further analysis by other software. Source code is hosted at http://github.com/egonet/egonet.
    Downloads: 8 This Week
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  • 6
    GeOxygene
    GeOxygene aims at providing an open framework which implements OGC/ISO specifications for the development and deployment of geographic (GIS) applications. It is a open source contribution of the COGIT lab. at the IGN (the French National Mapping Agency).
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  • 7
    An IDE for people interested in Machine Vision/Image Processing. Written in Java, using JAI. It allows users to view image data and also provides a drag and drop environment that users can create/execute graphs of JAI operators.
    Downloads: 3 This Week
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  • 8
    RoundedImageView

    RoundedImageView

    A fast ImageView that supports rounded corners, ovals, and circles

    A fast ImageView (and Drawable) that supports rounded corners (and ovals or circles) based on the original example from Romain Guy. It supports many additional features including ovals, rounded rectangles, ScaleTypes and TileModes. There are many ways to create rounded corners in android, but this is the fastest and best one that I know of because it does not create a copy of the original bitmap, does not use a clipPath which is not hardware accelerated and not anti-aliased, does not use...
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  • 9
    This is a tool for patent searching, downloading and analyzing. Analysis focuses on patent-families, citation-networks, assignee-networks , and inventor-networks.
    Downloads: 4 This Week
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  • 10
    Marid

    Marid

    Free data acquisition and data visualization cross-platform software

    Marid is a cross-platform data acquisition and visualization software intended to build complex and hierarchical data acquisition systems. The base concepts of its architecture include: * Graphical deploy configuration builders * Powerful Groovy scripting language * Embedded database ( H2 , HSQLDB) to store data * Cross-platform design (write once, run anywhere) * Embedded GUI-configurable binary/ascii device protocol parser/generator * Deploy manager to deploy firmwares to remote...
    Downloads: 0 This Week
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  • 11
    Temperature Change Viewer
    A tool for visualizing changes in temperature over time.
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  • 12

    Card Raytracer Benchmark

    Short C++/Java/C#/Python benchmark

    This is a short C++/Java/C#/Python benchmark. Based on Paul Heckbert's sources. Thank you Paul!
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  • 13
    An open source workbench for chemo- and bioinformatics built on the Eclipse Rich Client Platform (RCP).
    Downloads: 1 This Week
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  • 14
    UltimateRecyclerView

    UltimateRecyclerView

    A RecyclerView(advanced and flexible version of ListView in Android)

    UltimateRecyclerView is a RecyclerView(advanced and flexible version of ListView) with pulling to refresh, loading more, swiping to dismiss, draging and drop, animations ,sticky header,show or hide toolbar and FAB when scrolling and many other features.You can use it just like RecyclerView. Notice that UltimateRecyclerView is a project under development. Swipe to refresh(using android.support.v4.widget.SwipeRefreshLayout). Many kinds of animations. Swipe to dismiss. Parallax or normal head...
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  • 15

    Jedule

    Jedule is Yet another Gantt Chart Viewer

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  • 16
    Syntainia
    The objective of this project is to provide an innovative tool for visualization of multiples genomes. Written in Java, it presents a simple and intuitive user interface to view and manipulate the relationships between groups of genes.
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  • 17
    Downloads: 1 This Week
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  • 18
    µTide based, off-line tide predictor - includes times and heights for high and low tide in feet or metres for US, Brazil, Australia, New Zealand, S. Pacific and Japanese ports (see downloads for UK, Germany, Holland and Canada data).
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  • 19
    Visualization of Protein-Ligand Graphs

    Visualization of Protein-Ligand Graphs

    Compute protein graphs. Moved to https://github.com/MolBIFFM/PTGLtools

    NOTE: Project moved to https://github.com/MolBIFFM/PTGLtools. The Visualization of Protein-Ligand Graphs (VPLG) software package computes and visualizes protein graphs. It works on the super-secondary structure level and uses the atom coordinates from PDB files and the SSE assignments of the DSSP algorithm. VPLG is command line software. If you do not like typing commands, try our PTGL web server: http://ptgl.uni-frankfurt.de/
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  • 20

    Waterloo

    Java-based scientific graphics

    Java-based scientific graphics with support for Java, Groovy, MATLAB, Python, the R statistical environment, Scala and SciLab.
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  • 21

    blitz-image

    GPU-accelerated image processing for java

    blitz-image is a library to support extremely fast image processing in java, harnessing GPU acceleration via OpenCL. Although more features will be added in time, the initial focus is on very fast high-quality image resizing, including bicubic resizing (both upscale and downscale). The performance of a typical bicubic upscale operation is typically in the order of 10 times faster than via the standard AWT mechanism using RenderingHints.VALUE_INTERPOLATION_BICUBIC.
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  • 22
    Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutit
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  • 23

    Freemind Search Plugin

    Plugin to allow search from multiple Freemind maps

    This is a plugin for FreeMind ( https://sourceforge.net/projects/freemind ) The main app only allows you to search the current open map. This plugin will allow you to search multiple maps for chosen key words. Code now at https://github.com/leonarduk/freemindsearchplugin
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  • 24
    JFreeChart
    JFreeChart is a free (LGPL) chart library for the Java(tm) platform. It supports bar charts, pie charts, line charts, time series charts, scatter plots, histograms, simple Gantt charts, Pareto charts, bubble plots, dials, thermometers and more. *** JFreeChart has moved to GitHub: https://github.com/jfree/jfreechart ***
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    Downloads: 162 This Week
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  • 25
    JTexXchart

    JTexXchart

    Java library for drawing 2D charts with LaTeX math support

    Call me a purist, but I was never happy with the graphs produced with existing (free) Java tools. My dream package is lightweight with minimal dependencies, offers clean vector-graphics export and TeX-support for typesetting mathematical elements in axis labels, chart legends etc. This is hard (impossible?) to find and I thus decided to construct my own, mostly from existing code. This project is based on refactored versions of the popular packages 'XChart' (orig. by Tim Molter, © Knowm Inc.) and 'JLatexMath' (part of the SciLab project, derived from the JMathTeX project). ...
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