Showing 273 open source projects for "command-line"

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  • 1
    RoadRunner represents a state-of-the-art simulation library for SBML models. It is fast, portable and accurate. This projects hosts the library and tools using the library.
    Downloads: 0 This Week
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  • 2
    Krisk

    Krisk

    Statistical Interactive Visualization with pandas+Jupyter integration

    Krisk brings Echarts to the Python Data Science Ecosystem, and helpful tools for high-level statistical interactive visualization.
    Downloads: 0 This Week
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  • 3

    Coastline Evolution Model

    Modified version of the Coastline Evolution Model (CEM)

    The Coastline Evolution Model (CEM), originally developed by Ashton et al. (2001), Ashton and Murray (2006) and Valvo et al. (2006), is a reduced complexity, one-line sediment transport model that simulates the evolution of coastlines via wave-driven alongshore sediment transport. The original CEM has no Graphical User Interface (GUI) and does not provide graphical visualisations during model runs. The modified version given here includes these features. This project forms part of a wider research project and further developments on this model are anticipated.
    Downloads: 0 This Week
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  • 4
    Fast Neurite Tracer

    Fast Neurite Tracer

    Semi-automatic neurite tracing with tera-bytes of imaging data.

    Fast Neurite Tracer (FNT) is a tool for semi-automated neurite tracing. FNT can handle big imaging data such as fMOST data. It can also process other types of light imaging data in general. FNT is designed to be * accurate in tracing (each tracing step needs your confirmation), * fast (operations using computer mouse is reduced with automatic searching), * scalable (large volume data of tera-bytes in size are supported). Other features include * the results can be exported to...
    Downloads: 0 This Week
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  • 5
    Marid

    Marid

    Free data acquisition and data visualization cross-platform software

    Marid is a cross-platform data acquisition and visualization software intended to build complex and hierarchical data acquisition systems. The base concepts of its architecture include: * Graphical deploy configuration builders * Powerful Groovy scripting language * Embedded database ( H2 , HSQLDB) to store data * Cross-platform design (write once, run anywhere) * Embedded GUI-configurable binary/ascii device protocol parser/generator * Deploy manager to deploy firmwares to remote...
    Downloads: 0 This Week
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  • 6

    Card Raytracer Benchmark

    Short C++/Java/C#/Python benchmark

    This is a short C++/Java/C#/Python benchmark. Based on Paul Heckbert's sources. Thank you Paul!
    Downloads: 0 This Week
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  • 7
    Krona

    Krona

    Hierarchical data browser

    Krona allows hierarchical data to be explored with zoomable HTML5 pie charts. Krona charts can be created using an Excel template or Krona Tools, which includes support for several bioinformatics tools and raw data formats.
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    Downloads: 7 This Week
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  • 8
    Taurus

    Taurus

    A python based User Interface library.

    The Taurus Project has *moved* to: https://github.com/taurus-org/taurus This SourceForge page is *outdated* and kept for historical reference only. Taurus is a python framework for control and data acquisition CLIs and GUIs in scientific/industrial environments. It supports multiple control systems or data sources: Tango, EPICS, ... New control system libraries and data sources can be integrated through plugins.
    Downloads: 0 This Week
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  • 9
    colorview2d

    colorview2d

    Extendible 2D color plotting tool.

    Visualize and analyze 3D data files using 2D colorplots. Inspired by spyview. Written in python.
    Downloads: 0 This Week
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  • 10
    Visualization of Protein-Ligand Graphs

    Visualization of Protein-Ligand Graphs

    Compute protein graphs. Moved to https://github.com/MolBIFFM/PTGLtools

    ...The Visualization of Protein-Ligand Graphs (VPLG) software package computes and visualizes protein graphs. It works on the super-secondary structure level and uses the atom coordinates from PDB files and the SSE assignments of the DSSP algorithm. VPLG is command line software. If you do not like typing commands, try our PTGL web server: http://ptgl.uni-frankfurt.de/
    Downloads: 0 This Week
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  • 11
    µTide based, off-line tide predictor - includes times and heights for high and low tide in feet or metres for US, Brazil, Australia, New Zealand, S. Pacific and Japanese ports (see downloads for UK, Germany, Holland and Canada data).
    Downloads: 0 This Week
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  • 12
    Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutit
    Downloads: 0 This Week
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  • 13

    Corbata

    CORe microBiome Analysis Tools

    Corbata is a set of statistical tools that can be used to analyze the core microbiome across a set of samples.
    Downloads: 0 This Week
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  • 14

    Crygr

    Compare and visualize charge densities from various file formats.

    This project is a small program using Qt for calculation and visualization of electron charge densities in crystals and molecules. It can create a 2D plane of charge densities or create a 1D representation of the charge densities along a given line, in both cases it can also export the graphical representations to various image formats. The program can import various file formats such as space 3D grids of charge density values, created in a quantum chemistry programs Gaussian, Crystal and VASP. Wave functions in the form of .wfn files are also supported and serve, not only to compute the charge densities, but also laplacian as the sum of second partial derivatives of charge density. ...
    Downloads: 0 This Week
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  • 15
    Antiprism - Polyhedron Modelling
    TO DOWNLOAD ANTIPRISM GO TO: http://www.antiprism.com/download Antiprism is a set of programs for generating, manipulating, transforming and visualising polyhedra.
    Downloads: 0 This Week
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  • 16
    Creates interactive plots of data lines over a time scale. Automatic detection of input format and scale will result in instantaneous results without any need for configuration.
    Downloads: 0 This Week
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  • 17
    JFreeChart
    JFreeChart is a free (LGPL) chart library for the Java(tm) platform. It supports bar charts, pie charts, line charts, time series charts, scatter plots, histograms, simple Gantt charts, Pareto charts, bubble plots, dials, thermometers and more. *** JFreeChart has moved to GitHub: https://github.com/jfree/jfreechart ***
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    Downloads: 304 This Week
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  • 18
    Glimpse Plotting Library

    Glimpse Plotting Library

    WPF Plotting Library

    Glimpse is a .NET 4.6 plotting library for WPF projects. It currently contains five classes: a scatter plot, a line graph, an histogram, a raster plot to display matrix data and a tree plot to visualize recursive XML data. Main attributes can be customized through the respective constructors, additional changes are available through public properties. To use the packaged classes just reference the library in your project, instantiate a new plot and add it to a display container of your choice.
    Downloads: 5 This Week
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  • 19
    RoiView
    Explore InSAR data and more
    Downloads: 0 This Week
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  • 20
    PHPlot

    PHPlot

    A PHP class for creating graphs, plots, charts

    ...It works with PHP5 and the PHP GD extension to produce PNG, GIF, or JPEG images. TrueType fonts (TTF) are optional, or built-in GD fonts can be used. The available plot types include: area, bars, line/points, lines, pie, points, squared, stacked-bars, and thin bar-line. Labels, tick marks, plot legend, and X/Y axes and more are all configurable. Images can be imported as a background, multiple graphs can be drawn on one image, and images can be saved to disk or returned to a browser.
    Downloads: 7 This Week
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  • 21

    ipcvis

    Visualize Inter Process Communication

    Small python script that can visualize Inter Process Communication on Linux. It can create a graph of TCP and Unix sockets, pipes and also process hierarchy. Short (59 sec) demo visualizing ssh client connecting to ssh server on the same Ubuntu host: http://youtu.be/8XFKwzkexQY Longer (2 min 13 sec) demo visualizing ZoneMinder surveillance solution operation (stopping, starting, enabling and viewing camera): http://youtu.be/kM7klE61Ibk Tested on Ubuntu 14.10 and Debian...
    Downloads: 0 This Week
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  • 22
    This is a sophisticated & integrated simulation and analysis environment for dynamical systems models of physical systems (ODEs, DAEs, maps, and hybrid systems). It supports symbolic math, optimization, continuation, data analysis, biological apps...
    Downloads: 3 This Week
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  • 23

    Pyxplot

    Graph Plotting Package and Scientific Scripting Language

    Pyxplot is a scientific scripting language, graph plotting tool and vector graphics suite. It runs in a command-line environment under Linux, Mac OS X, and other POSIX systems.
    Downloads: 0 This Week
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  • 24
    ADOMA
    ...ADOMA is a commandline program that can easily be used in pipelines. For more information check the README.md in the Files section. How to cite ADOMA: Zaal, D. and Nota, B. (2016), ADOMA: A Command Line Tool to Modify ClustalW Multiple Alignment Output. Mol. Inf., 35: 42–44. doi: 10.1002/minf.201500083 http://onlinelibrary.wiley.com/doi/10.1002/minf.201500083/abstract
    Downloads: 0 This Week
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  • 25
    scipion-xmipp

    scipion-xmipp

    Image processing framework to integrate EM software packages.

    ...Additionally, all steps are tracked and can be reproduced later on. Xmipp is a well-known package in the EM image processing. It is integrated into Scipion and contains the algorithms in the core libraries and command line programs.
    Downloads: 0 This Week
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