Search Results for "amped five software" - Page 3
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Showing 221 open source projects for "amped five software"
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GMOL
A tool for 3D genome structure visualization
GMOL is an application designed to visualize genome structure in 3D. It allows users to view the genome structure at multiple scales, including: global, chromosome, loci, fiber, nucleosome, and nucleotide. This software was built upon the pre-existing Jmol package by Prof. Cheng's group. The software is developed in Prof. Jianlin Cheng's Bioinformatics, Data Mining and Machine Learning Laboratory in the Computer Science Department at the University of Missouri - Columbia, USA. The project... -
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This site hosts the source code for C++ version of the Broker for SBW, NOM module, advanced simulation suite, analysis applications and model editors.
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Calculation of camshafts - allows to define a camshaft profile on the set trajectory which should provide the given mechanism. The trajectory can be set graphically, co-ordinates or function.
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PDFsharp
PDFsharp is a .NET library for creating and modifying PDF documents.
PDFsharp moved to https://github.com/empira/PDFsharp PDFsharp is a .NET library for creating and modifying Adobe PDF documents programmatically from any .NET language like C# or VB.NET. PDFsharp defines classes for the objects found in PDF files, so you never have to deal with IDs or references directly. The downloads include MigraDoc Foundation, a .NET library for creating documents on the fly (supports PDF and RTF). PDFsharp is the .NET library that easily creates and processes PDF... -
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DatacenterManager
UNIX Performance Monitoring / Trend Analysis Java Software
Remotely Inventory and Poll UNIX servers in seconds. (without installing extra software on your servers, just by SSH communication plain old UNIX commands).https://sites.google.com/site/ronuitzaandam/ Your entire datacenter can be automatically inventoried by supplying hostname, username & password for each server, either “one by one” or via an automated CSV host-list import file. This software goes great with other UNIX software like WinSCP and Putty etc !!! -
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isiKnock
In silico knockouts for signaling pathways
Signaling pathways are complex and intertwined processes. The perturbation of biological systems can reveal the complicated interplay and dependencies of pathway components. isiKnock is a software to automatically conduct and visualize in silico knockouts for signaling pathways (Hannig et al. 2019). isiKnock predicts the knockout behavior based on the calculation of signal flows at steady state. For an explanation of the concept of in silico knockouts, we refer to Scheidel et al. 2016 and Amstein et al. 2017. Hannig et al. (2019) isiKnock: in silico knockouts in signaling pathways, Bioinformatics, 35(5), 892–894 Amstein et al. (2017) Manatee invariants reveal functional pathways in signaling networks. ... -
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FractalNow
Fast, advanced, multi-platform fractal generator
FractalNow provides users with tools to generate pictures of various types of fractals quickly and easily. It is made of both a command line tool, FractalNow, and a graphical tool, QFractalNow. The graphical tool, based on Qt library, allows users to explore fractals intuitively and generate pictures. Both tools are entirely multi-threaded and implement advanced algorithms and heuristics that make computation very fast compared to most existing free fractal generators. -
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Small utility to make cvsgraph ( http://www.akhphd.au.dk/~bertho/cvsgraph/ ) useful also for subversion users
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Canvas-2DGC
A user-extensible Freemat based 1DGC and GCxGC data analysis software.
Canvas-2DGC is a user-extensible, Freemat based 1DGC and comprehensive 2DGC (GCxGC) data visualization and processing software. GCxGC-MS data analysis is supported for Agilent GCMS data format. The first goal of this project is to provide a highly intelligent analytical tool for reducing a complex chromatographic data analysis, either 1D or 2D, to just a few simple and intuitive steps. The second goal is to provide a fast and practical way of customizing or extending functionalities... -
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EntOpt Layout
Relative entropy optimization network layout plugin
The goal of this project is to implement a graph layout / network visualization algorithm as a Java plugin for Cytoscape (http://cytoscape.org/), using a recently published relative entropy optimization based method, called Unified Data Representation (Kovács IA et al. Sci Rep. 2015). If you are using the plugin, please cite: Ágg B, Császár A, Szalay-Bekő M, Veres DV, Mizsei R, Ferdinandy P, Csermely P and Kovács IA (2019) The EntOptLayout Cytoscape plug-in for the efficient visualization... -
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gablock
Easy Block Diagram Creator using YAML and GraphViz
gablock is a Block Diagram creation tool. Block Diagrams are described in easy-to-write YAML files. These files are translated into the DOT language used by GraphViz. GraphViz is then called to produce a block diagram in any format GraphViz supports, such as PNG, JPEG, SVG, or PDF. -
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Freemat is an interpreted, matrix-oriented development environment for engineering and scientific applications, similar to the commercial package MATLAB. Freemat provides visualization, image manipulation, and plotting as well as parallel programming.
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Egonet is a program for the collection and analysis of egocentric network data. It helps you create the questionnaire, collect data, and provide general global network measures and data matrixes that can be used for further analysis by other software. Source code is hosted at http://github.com/egonet/egonet.
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Excel to Graphviz
Create graphviz diagrams with excel
Free, easy to use, excel tool to create data and process flow diagrams with table data In separate excel sheets you define items(nodes), lines(edges) and grouping(clusters) Separate definition of node, edge and cluster styles Graph settings sheet Output control sheet Examples and readme are included in the zip file Get it working: -Install graphviz (http://graphviz.org/Download.php) -Download Excel to Graphviz -Open one of the ExcelToGraphviz workbooks -Go to sheet settings... -
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Matplotlib is a python library for making publication quality plots using a syntax familiar to MATLAB users. Matplotlib uses numpy for numerics. Output formats include PDF, Postscript, SVG, and PNG, as well as screen display. As of matplotlib version 1.5, we are no longer making file releases available on SourceForge. Please visit http://matplotlib.org/users/installing.html for help obtaining matplotlib.
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GeOxygene aims at providing an open framework which implements OGC/ISO specifications for the development and deployment of geographic (GIS) applications. It is a open source contribution of the COGIT lab. at the IGN (the French National Mapping Agency).
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istiChartLib
C++ Chart Library for wxWidgets
IstiChartLib is one of the simplest c++ library for making chart or graph. It is developed using wxWidgets library. For windows, please use IstiChartLib.zip. For Linux (tested on Ubuntu) use IstiChartLib_Linux.tar.gz. For detailed documentation, please visit www.firagiel.com Password to extract: firagiel -
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An open source workbench for chemo- and bioinformatics built on the Eclipse Rich Client Platform (RCP).
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Orbit Wizard
Educational open source tool for the design of geocentric orbits
Orbit Wizard is an educational open source tool developed in Matlab GUIDE for the design and visualization of geocentric orbits. The current version is in an early phase of development. Please employ the Orbit Wizard forum to report bugs and suggestions. The developers of Orbit Wizard are Álvaro Romero Calvo and Fernando Soler Lanagrán. Orbit Wizard is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License v2.0 External... -
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Taurus
A python based User Interface library.
The Taurus Project has *moved* to: https://github.com/taurus-org/taurus This SourceForge page is *outdated* and kept for historical reference only. Taurus is a python framework for control and data acquisition CLIs and GUIs in scientific/industrial environments. It supports multiple control systems or data sources: Tango, EPICS, ... New control system libraries and data sources can be integrated through plugins. -
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Yggdrasill
3D Evolutionary Tree Visualization
Yggdrasill is a 3D phylogenetic tree visualization software based on the Unity 5 engine. Intended for educational and scientific purposes this demonstration release allows to display and explore evolutionary relationships between different terrestrial vertebrate species. Currently available features include procedural tree generation of evolutionary data provided by the Tree of Life (ToL) Web Project (http://tolweb.org/tree/), full three dimensional camera controls as well as a web search, an extinct species overlay and more. ... -
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Tool support for creating FMC* diagrams [Block diagrams, Petri nets, Entity-Relationship diagrams (ERD)] in MS-Visio 2000 and newer. Features: stencils, consistency checking, Petri net simulation, exporter e.g. pdf, ... *Fundamental Modeling Concepts A stripped down version of the stencil set is available for TAM (Technical Architecture Modeling of SAP). This set uses UML notation and contains Block, Activity, Sequence, State, Class, and Component diagrams. It doesn't contain Simulation,...
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wxEcMath
Easy mathematics in wxWidgets
Tiny library written in C++/wxWidgets designed to manage mathematical objects : parser of expressions, plots, matrixes and complex numbers. Ansi and Unicode are supported. Documentation and rich samples are provided. Compiles with MSVC, BCC, GCC and Clang. Now on Git. -
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JFreeChart is a free (LGPL) chart library for the Java(tm) platform. It supports bar charts, pie charts, line charts, time series charts, scatter plots, histograms, simple Gantt charts, Pareto charts, bubble plots, dials, thermometers and more. *** JFreeChart has moved to GitHub: https://github.com/jfree/jfreechart ***
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Glimpse Plotting Library
WPF Plotting Library
Glimpse is a .NET 4.6 plotting library for WPF projects. It currently contains five classes: a scatter plot, a line graph, an histogram, a raster plot to display matrix data and a tree plot to visualize recursive XML data. Main attributes can be customized through the respective constructors, additional changes are available through public properties. To use the packaged classes just reference the library in your project, instantiate a new plot and add it to a display container of your choice.