Open Source Data Visualization Software - Page 3
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Mixed-effects models in Julia
A Julia package for fitting (statistical) mixed-effects models
This package defines linear mixed models (LinearMixedModel) and generalized linear mixed models (GeneralizedLinearMixedModel). Users can use the abstraction for statistical model API to build, fit (fit/fit!), and query the fitted models. A mixed-effects model is a statistical model for a response variable as a function of one or more covariates. For a categorical covariate the coefficients associated with the levels of the covariate are sometimes called effects, as in "the effect of using Treatment 1 versus the placebo". If the potential levels of the covariate are fixed and reproducible, e.g. the levels for Sex could be "F" and "M", they are modeled with fixed-effects parameters. If the levels constitute a sample from a population, e.g. the Subject or the Item at a particular observation, they are modeled as random effects. -
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OnlineStats.jl
Single-pass algorithms for statistics
OnlineStats does statistics and data visualization for big/streaming data via online algorithms. High-performance single-pass algorithms for statistics and data viz. Updated one observation at a time. Algorithms use O(1) memory. Algorithms use O(1) memory. -
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PythonCall & JuliaCall
Python and Julia in harmony
Bringing Python® and Julia together in seamless harmony. Call Python code from Julia and Julia code from Python via a symmetric interface. Simple syntax, so the Python code looks like Python and the Julia code looks like Julia. Intuitive and flexible conversions between Julia and Python: anything can be converted, you are in control. Fast non-copying conversion of numeric arrays in either direction: modify Python arrays (e.g. bytes, array. array, numpy.ndarray) from Julia or Julia arrays from Python. Helpful wrappers: interpret Python sequences, dictionaries, arrays, dataframes and IO streams as their Julia counterparts, and vice versa. -
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RuntimeGeneratedFunctions.jl
Functions generated at runtime without world-age issues or overhead
RuntimeGeneratedFunctions are functions generated at runtime without world-age issues and with the full performance of a standard Julia anonymous function. This builds functions in a way that avoids eval. For technical reasons, RuntimeGeneratedFunctions needs to cache the function expression in a global variable within some module. This is normally transparent to the user, but if the RuntimeGeneratedFunction is evaluated during module precompilation, the cache module must be explicitly set to the module currently being precompiled. This is relevant for helper functions in some modules that construct a RuntimeGeneratedFunction on behalf of the user. -
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Surrogates.jl
Surrogate modeling and optimization for scientific machine learning
A surrogate model is an approximation method that mimics the behavior of a computationally expensive simulation. In more mathematical terms: suppose we are attempting to optimize a function f(p), but each calculation of f is very expensive. It may be the case we need to solve a PDE for each point or use advanced numerical linear algebra machinery, which is usually costly. The idea is then to develop a surrogate model g which approximates f by training on previous data collected from evaluations of f. -
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XLSX.jl
Excel file reader and writer for the Julia language
XLSX.jl is a Julia package to read and write Excel spreadsheet files. Internally, an Excel XLSX file is just a Zip file with a set of XML files inside. The formats for these XML files are described in the Standard ECMA-376. This package follows the EMCA-376 to parse and generate XLSX files. -
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ClimateTools.jl
Climate science package for Julia
Climate analysis tools in Julia. ClimateTools.jl is a collection of commonly-used tools in Climate science. Basics of climate field analysis are covered, with some forays into exploratory techniques associated with climate scenario design. The package is aimed to ease the typical steps of analysis of climate models outputs and gridded datasets (support for weather stations is a work-in-progress). Climate indices and bias correction functions are coded to leverage the use of multiple threads. To gain maximum performance, use (bash shell Linux/MacOSX) export JULIA_NUM_THREADS=n, where n is the number of threads. To get an idea of the number of threads you can use type (in Julia) Sys.THREADS. This is especially useful for bias correction. -
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CommonMark.jl
A CommonMark-compliant parser for Julia
A CommonMark-compliant parser for Julia. -
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DiffEqBayes.jl
Extension functionality which uses Stan.jl, DynamicHMC.jl
This repository is a set of extension functionality for estimating the parameters of differential equations using Bayesian methods. It allows the choice of using CmdStan.jl, Turing.jl, DynamicHMC.jl and ApproxBayes.jl to perform a Bayesian estimation of a differential equation problem specified via the DifferentialEquations.jl interface. -
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DiffOpt.jl
Differentiating convex optimization programs w.r.t. program parameters
DiffOpt.jl is a package for differentiating convex optimization programs (JuMP.jl or MathOptInterface.jl models) with respect to program parameters. Note that this package does not contain any solver. This package has two major backends, available via the reverse_differentiate! and forward_differentiate! methods, to differentiate models (quadratic or conic) with optimal solutions. Differentiable optimization is a promising field of convex optimization and has many potential applications in game theory, control theory and machine learning. Recent work has shown how to differentiate specific subclasses of convex optimization problems. But several applications remain unexplored. With the help of automatic differentiation, differentiable optimization can have a significant impact on creating end-to-end differentiable systems to model neural networks, stochastic processes, or a game. -
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Finch.jl
Sparse tensors in Julia and more
Finch is a cutting-edge Julia-to-Julia compiler specially designed for optimizing loop nests over sparse or structured multidimensional arrays. Finch empowers users to write conventional for loops which are transformed behind-the-scenes into fast sparse code. -
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HomotopyContinuation.jl
A Julia package for solving systems of polynomials
HomotopyContinuation.jl is a Julia package for solving systems of polynomial equations by numerical homotopy continuation. Many models in the sciences and engineering are expressed as sets of real solutions to systems of polynomial equations. We can optimize any objective whose gradient is an algebraic function using homotopy methods by computing all critical points of the objective function. An important special case is when the objective function is the euclidean distance to a given point. An example of an non-algebraic objective function whose derivative is algebraic is the Kullback–Leibler divergence. Homotopy continuation methods allow us to study the conformation space of molecules as for example cyclooctane (CH₂)₈. This molecule consists of eight carbon atoms aligned in a ring, and eight hydrogen atoms, each of which is attached to one of the carbon atoms. -
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LatticeQCD.jl
A native Julia code for lattice QCD with dynamical fermions in 4D
This code enables you to perform lattice QCD calculations! A native Julia code for Lattice QCD. -
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MLJBase.jl
Core functionality for the MLJ machine learning framework
Repository for developers that provides core functionality for the MLJ machine learning framework. MLJ is a Julia framework for combining and tuning machine learning models. This repository provides core functionality for MLJ. -
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Makie
Interactive data visualizations and plotting in Julia
Makie is an interactive data visualization and plotting ecosystem for the Julia programming language, available on Windows, Linux, and Mac. The backend packages GLMakie, WGLMakie, CairoMakie and RPRMakie add different functionalities: You can use Makie to interactively explore your data and create simple GUIs in native Windows or web browsers, export high-quality vector graphics or even raytrace with physically accurate lighting. Choose one or more backend packages: GLMakie (interactive OpenGL in native OS windows), WGLMakie (interactive WebGL in browsers, IDEs, notebooks), CairoMakie (static 2D vector graphics and images), and RPRMakie (raytracing). Each backend re-exports all of Makie.jl so you don't have to install or load it explicitly. -
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Metal.jl
Metal programming in Julia
With Metal.jl it's possible to program GPUs on macOS using the Metal programming framework. The package is a work in progress. There are bugs, functionality is missing, and performance hasn't been optimized. Expect to have to make changes to this package if you want to use it. PRs are very welcome. These requirements are fairly strict, and are due to our limited development resources (manpower, hardware). Technically, they can be relaxed. If you are interested in contributing to this, see this issue for more details. In practice, Metal.jl will probably work on any macOS 10.15+, and other GPUs that are supported by Metal might also function (if only partially), but such combinations are unsupported for now. -
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Pkg Julia
Package manager for the Julia programming language
Unlike traditional package managers, which install and manage a single global set of packages, Pkg is designed around “environments”: independent sets of packages that can be local to an individual project or shared and selected by name. The exact set of packages and versions in an environment is captured in a manifest file which can be checked into a project repository and tracked in version control, significantly improving reproducibility of projects. If you’ve ever tried to run code you haven’t used in a while only to find that you can’t get anything to work because you’ve updated or uninstalled some of the packages your project was using, you’ll understand the motivation for this approach. In Pkg, since each project maintains its own independent set of package versions, you’ll never have this problem again. Moreover, if you check out a project on a new system, you can simply materialize the environment described by its manifest file and immediately be up and running. -
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ProbNumDiffEq.jl
Probabilistic Numerical Differential Equation solvers via Bayesian fil
ProbNumDiffEq.jl provides probabilistic numerical ODE solvers to the DifferentialEquations.jl ecosystem. The implemented ODE filters solve differential equations via Bayesian filtering and smoothing. The filters compute not just a single point estimate of the true solution, but a posterior distribution that contains an estimate of its numerical approximation error. -
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QuantumClifford.jl
Clifford circuits, graph states, and other quantum Stabilizer tools
A Julia package for working with quantum stabilizer states and Clifford circuits that act on them. Graphs states are also supported. The package is already very fast for the majority of common operations, but there are still many low-hanging fruits performance-wise. See the detailed suggested readings & references page for background on the various algorithms. -
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XELFViewer
ELF file viewer/editor for Windows, Linux and MacOS
XELFViewer is a graphical viewer and editor for Executable and Linkable Format files. It provides a cross-platform environment for inspecting binaries commonly used on Linux and other Unix-like systems. The tool is intended for reverse engineering, binary research, and low-level software analysis rather than ordinary file browsing. Users can examine ELF structures and navigate the data contained inside 32-bit and 64-bit binaries. Its architecture shares components with a larger suite of hexadecimal, disassembly, format-parsing, and analysis utilities. The project includes source and build workflows for Windows, Linux, and macOS. This makes ELF inspection available from multiple operating systems without requiring the analyzed executable to run on the host platform. -
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FREE!ship is a surface modeling program for designing ships yachts and boats. Subdivision surfaces are used rather than NURBS to give the designer the freedom to design ANY desired hullshape. Unfold surfaces, panel based hydrostatics, various exp formats
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BAT.jl
A Bayesian Analysis Toolkit in Julia
Welcome to BAT, a Bayesian analysis toolkit in Julia. BAT.jl offers a variety of posterior sampling, mode estimation and integration algorithms, supplemented by plotting recipes and I/O functionality. BAT.jl originated as a rewrite/redesign of BAT, the Bayesian Analysis Toolkit in C++. BAT.jl now offer a different set of functionality and a wider variety of algorithms than its C++ predecessor. -
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DFTK.jl
Density-functional toolkit
The density-functional toolkit, DFTK for short, is a collection of Julia routines for experimentation with plane-wave density-functional theory (DFT). The unique feature of this code is its emphasis on simplicity and flexibility with the goal of facilitating algorithmic and numerical developments as well as interdisciplinary collaboration in solid-state research. -
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DynamicQuantities.jl
Lightweight + fast physical quantities in Julia
DynamicQuantities defines a simple statically-typed Quantity type for Julia. Physical dimensions are stored as a value, as opposed to a parametric type, as in Unitful.jl. This can greatly improve both runtime performance, by avoiding type instabilities, and startup time, as it avoids overspecializing methods. -
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FossFLOW
Make beautiful isometric infrastructure diagrams
FossFLOW is an open-source Progressive Web App for creating visually rich isometric infrastructure and network diagrams directly in the browser. Built with React and the Isoflow library, the application provides a specialized environment for producing 2.5D technical diagrams that are especially useful for DevOps and architecture documentation. The project is structured as a monorepo containing both a reusable React component library and the full web application wrapper. Because it runs fully client-side with offline support, users can design diagrams without sending data to external servers. FossFLOW focuses on usability through drag-and-drop components, connector tools, and automatic saving capabilities. Overall, it serves engineers and technical teams who want a modern, open alternative to traditional diagramming tools with a strong visual infrastructure focus.
