Search Results for "web-based" - Page 12
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Showing 954 open source projects for "web-based"
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isiKnock
In silico knockouts for signaling pathways
...isiKnock is a software to automatically conduct and visualize in silico knockouts for signaling pathways (Hannig et al. 2019). isiKnock predicts the knockout behavior based on the calculation of signal flows at steady state. For an explanation of the concept of in silico knockouts, we refer to Scheidel et al. 2016 and Amstein et al. 2017. Hannig et al. (2019) isiKnock: in silico knockouts in signaling pathways, Bioinformatics, 35(5), 892–894 Amstein et al. (2017) Manatee invariants reveal functional pathways in signaling networks. ... -
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SBML2LaTeX
A documentation and report generator for systems biological models
...SBML2LATEX can also be downloaded and used locally in batch mode or interactively with its Graphical User Interface or several command line options. The purpose of SBML2LATEX is to provide a way to read the contents of XML-based SBML files. This is helpful and important for, e.g., error detection, proofreading and model communication. -
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Flame Graphs
Stack trace visualizer
...The top edge shows what is on-CPU, and beneath it is its ancestry. The colors are usually not significant, picked randomly to differentiate frames. Flame charts were first added by Google Chrome's WebKit Web Inspector (bug). While inspired by flame graphs, flame charts put the passage of time on the x-axis instead of the alphabet. -
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NVD3
A reusable charting library written in d3.js
This project is an attempt to build re-usable charts and chart components for d3.js without taking away the power that d3.js gives you. This is a very young collection of components, with the goal of keeping these components very customizable, staying away from your standard cookie cutter solutions. Download d3.v3.js. This is the only required library for NVD3. Download the latest nv.d3.js (version 1.8.1). Get the development version, or minified production version. Don’t forget the NVD3 css... -
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FractalNow
Fast, advanced, multi-platform fractal generator
FractalNow provides users with tools to generate pictures of various types of fractals quickly and easily. It is made of both a command line tool, FractalNow, and a graphical tool, QFractalNow. The graphical tool, based on Qt library, allows users to explore fractals intuitively and generate pictures. Both tools are entirely multi-threaded and implement advanced algorithms and heuristics that make computation very fast compared to most existing free fractal generators. -
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Canvas-2DGC
A user-extensible Freemat based 1DGC and GCxGC data analysis software.
Canvas-2DGC is a user-extensible, Freemat based 1DGC and comprehensive 2DGC (GCxGC) data visualization and processing software. GCxGC-MS data analysis is supported for Agilent GCMS data format. The first goal of this project is to provide a highly intelligent analytical tool for reducing a complex chromatographic data analysis, either 1D or 2D, to just a few simple and intuitive steps. -
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Pi-Trav
An interactive pi walk.
A simulation and visualization of random walks based on the digits pi. This program also has a settings menu. -
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EntOpt Layout
Relative entropy optimization network layout plugin
The goal of this project is to implement a graph layout / network visualization algorithm as a Java plugin for Cytoscape (http://cytoscape.org/), using a recently published relative entropy optimization based method, called Unified Data Representation (Kovács IA et al. Sci Rep. 2015). If you are using the plugin, please cite: Ágg B, Császár A, Szalay-Bekő M, Veres DV, Mizsei R, Ferdinandy P, Csermely P and Kovács IA (2019) The EntOptLayout Cytoscape plug-in for the efficient visualization of major protein complexes in protein-protein interaction and signalling networks, Bioinformatics 35(21):4490-4492 https://academic.oup.com/bioinformatics/article/35/21/4490/5475596 Our detailed Tutorial on the use of the plugin: https://suopte.com/entopt_2_1_tutorial_20200518.pdf A video about the version 2.1: http://suopte.com/entopt_2_1_tutorial_video.mp4 Don't hesitate to send any questions, comments or bug reports also to agg.bence {at} med.semmelweis-univ.hu. -
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A spring-based 3D graph layout tool written in Java. Rendering is performed in OpenGL via the JOGL library.
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ctioga2
polymorphic plotting program
ctioga2 is a plotting program in the spirit of gnuplot. It can be used either directly on command-line or writing command files (or a mix of both). It produces publication-quality PDF files. It is based on the Tioga plotting library. -
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PyVE
PyVE is image analysis and visualization environment
PyVE is image analysis and Visualization Environment focused at clinical use. At the core of it there is a powerful viewer for displaying 3D datasets (MRI, PET, CT) based on VTK. It all comes precompiled allowing painless access to Python (2.x), the ITK toolkit for image analysis, numpy/scipy for numerical calculations, Qt and PyQt4 for the development Graphical User Interfaces. It is what you need for fast prototyping and development of more complex projects. -
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Egonet is a program for the collection and analysis of egocentric network data. It helps you create the questionnaire, collect data, and provide general global network measures and data matrixes that can be used for further analysis by other software. Source code is hosted at http://github.com/egonet/egonet.
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OpenGL based , OS-independent C++ library for the presentation of visual stimuli in Neuroscience experiments.
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OpenANN
Basic Artificial Neural Network
OpenANN is a basic artificial neural network toolset. It is not being actively maintained. For performance neural networking, consider an alternative (such as https://sourceforge.net/projects/openann-project or https://www.tensorflow.org) -
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Maui
Maui is the Maltcms User Interface
Maui is the Maltcms User Interface, a rich client application for Chromatography-Mass Spectrometry and related research areas. -
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RoadRunner represents a state-of-the-art simulation library for SBML models. It is fast, portable and accurate. This projects hosts the library and tools using the library.
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ImagingAnalysis
Direct tissue-level image quantification package for Mathematica
ImagingAnalysis is a Mathematica package that performs grid-based analysis of time-lapse imaging data saved in a sequence of TIFF files. This package requires Mathematica 7.0. Revised on 14 May 2017: Bugs are fixed and incompatibility issues are resolved. The current version runs on Mathematica 11. -
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3DBrainExplorer is a lightweight OpenGL-based 3D renderer for scientific visualization of volumetric data (NIfTI) featuring real-time image manipulation, AAL brain labels (Tzourio-Mazoyer et al., 2002), SPM5 statistical images and stereo display.
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GeOxygene aims at providing an open framework which implements OGC/ISO specifications for the development and deployment of geographic (GIS) applications. It is a open source contribution of the COGIT lab. at the IGN (the French National Mapping Agency).
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pair-trading-view
Pair Trading View - .NET application for visual analysis of synthetic
Pair Trading View - .NET application for visual analysis of synthetic financial instruments based on statistical models. https://github.com/dv-lebedev/pair-trading-view Look for binaries in "pair-trading-view\PairTradingView.WinFormsApp\bin\Debug" folder. -
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RoundedImageView
A fast ImageView that supports rounded corners, ovals, and circles
A fast ImageView (and Drawable) that supports rounded corners (and ovals or circles) based on the original example from Romain Guy. It supports many additional features including ovals, rounded rectangles, ScaleTypes and TileModes. There are many ways to create rounded corners in android, but this is the fastest and best one that I know of because it does not create a copy of the original bitmap, does not use a clipPath which is not hardware accelerated and not anti-aliased, does not use setXfermode to clip the bitmap and draw twice to the canvas. ... -
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Marid
Free data acquisition and data visualization cross-platform software
...The base concepts of its architecture include: * Graphical deploy configuration builders * Powerful Groovy scripting language * Embedded database ( H2 , HSQLDB) to store data * Cross-platform design (write once, run anywhere) * Embedded GUI-configurable binary/ascii device protocol parser/generator * Deploy manager to deploy firmwares to remote controllers/servers via secure channel * Embedded web-sever * Dynamically linked plugins available from Nexus Repository * Remote monitoring tools * Modular Marid IDE to manage them all -
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CS Figures
Heuristic-based fractal and music generator-256+ systems.
Welcome to CSFigures, the generative rendering program for all sorts of interpretations of digital roots. Digital roots in this program are constructed on a basis of a multiplication table, but with alternate counting systems contrasted, different from 0-9. The data is then analyzed by adding the imaginary digital symbols together, to achieve a single digit number, or alternately working with heuristics such as finding the last digit of each number. You may see your options once you make a... -
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SemaVis (Flex UI)
Semantics Visualization for Information Visualization and Analysis
...Thereby processes of knowledge acquisition, human information retrieval, and decision making are supported by a variety of interactive visual representations. The developed visualizations do not only allow to investigate the masses amount of various semantic formats on Web, e.g. Linked- Data or Social Networks, they also enable the interactive illustration of structured data. With SemaVis we developed a technology that provides various perspectives on the semantics of information. By combining different visualization techniques users and enterprises are able to perceive various data and information characteristics. ... -
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A tool for visualizing changes in temperature over time.
