Search Results for "peak"

Cap analysis of gene expression (CAGE) is a sequencing based technology to capture the 5’ ends of RNAs in a biological sample. After mapping, a CAGE peak on the genome indicates the position of an active transcriptional start site (TSS) and the number of reads correspond to its expression level. CAGE is prominently used in both the FANTOM and ENCODE project. MOIRAI is a compact yet flexible workflow system designed to carry out the main steps in data processing and analysis of CAGE data. ...

...BMDExpress Data Viewer is a useful tool to visualize, explore and analyze BMDExpress output files. Visualizing the data in this manner enables rapid assessment of data quality, model fit, doses of peak activity, most sensitive pathway perturbations and other metrics that will be useful in applying toxicogenomics in risk assessment. Tool Link: http://apps.sciome.com:8082/BMDX_Viewer/ Publication Link: http://onlinelibrary.wiley.com/doi/10.1002/jat.3265/abstract

PrepMS is a simple-to-use graphical application for MS data preprocessing, peak detection, and visual data quality assessment. PrepMS is a compiled stand-alone application. Project homepage: http://stat.tamu.edu/~yuliya/prepMS.html