Search Results for "toolbox"
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Showing 52 open source projects for "toolbox"
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Ferrite.jl
Finite element toolbox for Julia
A simple finite element toolbox written in Julia. -
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YALMIP
MATLAB toolbox for optimization modeling
MATLAB toolbox for optimization modeling. -
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FrankWolfe.jl
Julia implementation for various Frank-Wolfe and Conditional Gradient
This package is a toolbox for Frank-Wolfe and conditional gradient algorithms. Frank-Wolfe algorithms were designed to solve optimization problems where f is a differentiable convex function and C is a convex and compact set. They are especially useful when we know how to optimize a linear function over C in an efficient way. -
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InferOpt.jl
Combinatorial optimization layers for machine learning pipelines
InferOpt.jl is a toolbox for using combinatorial optimization algorithms within machine learning pipelines. It allows you to create differentiable layers from optimization oracles that do not have meaningful derivatives. Typical examples include mixed integer linear programs or graph algorithms. -
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MIRT.jl
MIRT: Michigan Image Reconstruction Toolbox (Julia version)
MIRT.jl is a collection of Julia functions for performing image reconstruction and solving related inverse problems. It is very much still under construction, although there are already enough tools to solve useful problems like compressed sensing MRI reconstruction. Trying the demos is a good way to get started. The documentation is even more still under construction. -
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gramm
Gramm is a complete data visualization toolbox for Matlab
Gramm is a MATLAB toolbox that enables the rapid creation of complex, publication-quality figures. Its design philosophy focuses on a declarative approach, where users specify the desired end result, as opposed to the traditional imperative method involving for loops, if/else statements, etc. The MATLAB implementation of gramm is inspired by the "grammar of graphics" principles (Wilkinson 1999) and the ggplot2 library for R by Hadley Wickham. -
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TIGRE
TIGRE: Tomographic Iterative GPU-based Reconstruction Toolbox
TIGRE is an open-source toolbox for fast and accurate 3D tomographic reconstruction for any geometry. Its focus is on iterative algorithms for improved image quality that have all been optimized to run on GPUs (including multi-GPUs) for improved speed. It combines the higher-level abstraction of MATLAB or Python with the performance of CUDA at a lower level in order to make it both fast and easy to use. -
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SatelliteToolbox.jl
A toolbox for satellite analysis written in julia language
The SatelliteToolbox.jl contains a set of packages with functions to perform analysis and build simulations related to satellites. It is used on a daily basis on projects at the Brazilian National Institute for Space Research (INPE). -
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Orange Data Mining
Orange: Interactive data analysis
Open source machine learning and data visualization. Build data analysis workflows visually, with a large, diverse toolbox. Perform simple data analysis with clever data visualization. Explore statistical distributions, box plots and scatter plots, or dive deeper with decision trees, hierarchical clustering, heatmaps, MDS and linear projections. Even your multidimensional data can become sensible in 2D, especially with clever attribute ranking and selections. -
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EEGLAB
EEGLAB is an open source signal processing environment
...EEGLAB is an open source signal processing environment for electrophysiological signals running on Matlab and Octave (command line only for Octave). This folder contains original Matlab functions from the EEGLAB (formerly ICA/EEG) Matlab toolbox, all released under the Gnu public license (see eeglablicence.txt). See the EEGLAB tutorial and reference paper (URLs given below) for more information. All distributed EEGLAB functions (admin, sigproc, pop, misc). -
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see
Visualisation toolbox for beautiful and publication-ready figures
see is an R package that serves as the visualization component of the easystats ecosystem, providing plotting utilities to produce publication-ready visualizations of statistical model parameters, diagnostics, predictions, and performance metrics. It works in conjunction with other easystats packages (such as parameters, performance, modelbased, bayestestR, etc.) to convert model outputs or summary objects into visual forms (dot-and-whisker plots, diagnostic plots, residual plots, etc.). It... -
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Euler Math Toolbox
Numerical and Symbolic Math Tool
Euler is a powerful all-in-one numerical software and includes Maxima for seamless symbolic computations. Euler supports Latex for math display, Povray for photo-realistic 3D scenes, Python, Matplotlib and C for scripting, and contains a full programming language. Features include libraries for numerical algorithms, optimization, plotting in 2D and 3D, graphics export, a complete help system, tutorials and examples. Euler runs in Windows natively, or in Linux via Wine. It is completely... -
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HyperTools
A Python toolbox for gaining geometric insights
HyperTools is a library for visualizing and manipulating high-dimensional data in Python. It is built on top of matplotlib (for plotting), seaborn (for plot styling), and scikit-learn (for data manipulation). Functions for plotting high-dimensional datasets in 2/3D. Static and animated plots. Simple API for customizing plot styles. Set of powerful data manipulation tools including hyperalignment, k-means clustering, normalizing and more. Support for lists of Numpy arrays, Pandas dataframes,... -
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Luigi
Python module that helps you build complex pipelines of batch jobs
...These tasks can be anything, but are typically long running things like Hadoop jobs, dumping data to/from databases, running machine learning algorithms, or anything else. You can build pretty much any task you want, but Luigi also comes with a toolbox of several common task templates that you use. It includes support for running Python mapreduce jobs in Hadoop, as well as Hive, and Pig, jobs. It also comes with file system abstractions for HDFS, and local files that ensures all file system operations are atomic. -
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atomes
Analysis, visualization, edition of 3D atomistic models
atomes is a Free (Open Source) cross-platform software licensed under the terms of the Affero GPL v3+ license. atomes is a toolbox developed to analyze, to visualize and to create/edit three-dimensional atomistic models. atomes also provides an advanced input preparation system for further calculations using well known molecular dynamics codes: - Classical MD : DL-POLY and LAMMPS - ab-initio MD : CPMD and CP2K - QM-MM MD : CPMD and CP2K atomes is developed by Dr. -
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ReViMS
ReViMS, a 3D volume rendering tool for light-sheet/confocal microscopy
...ReViMS is written in MATLAB (The MathWorks, Inc., Massachusetts, USA). It is an open-source tool and the source code is freely available at: http://sourceforge.net/p/revims Requirements: MATLAB R2017b and Image Processing Toolbox 10.1 or later versions. -
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GTB: Graphics Toolbox
C++ libraries and apps for computer graphics and data visualization
The Graphics Toolbox (GTB) is a collection of C++ libraries and apps for computer graphics and data visualization. Wagner Correa initially created GTB as part of his Ph.D. research at Princeton University in collaboration with Professor Claudio Silva and Dr. James Klosowski. Several other researchers later contributed to GTB (see the AUTHORS file). -
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Kinetic.jl
Universal modeling and simulation of fluid mechanics upon ML
Kinetic is a computational fluid dynamics toolbox written in Julia. It aims to furnish efficient modeling and simulation methodologies for fluid dynamics, augmented by the power of machine learning. Based on differentiable programming, mechanical and neural network models are fused and solved in a unified framework. Simultaneous 1-3 dimensional numerical simulations can be performed on CPUs and GPUs. -
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ReViSP
ReViSP, a 3D volume rendering MATLAB tool for multicellular spheroids
...ReViSP is written in MATLAB (The MathWorks, Inc., Massachusetts, USA) and the source code is freely provided. Requirements for running ReViSP from the source code: MATLAB 2020a and Image Processing Toolbox 11.1 or later versions. Please, when using this software, cite these articles: (a) F. Piccinini, et al., Cancer multicellular spheroids: Volume assessment from a single 2D projection. Computer Methods and Programs in Biomedicine, 118(2):95–106, 2015. (b) F. Piccinini, et al., Single-image based methods used for non-invasive volume estimation of cancer spheroids: a practical assessing approach based on entry-level equipment. ... -
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Bridge.jl
A statistical toolbox for diffusion processes
Statistics and stochastic calculus for Markov processes in continuous time, include univariate and multivariate stochastic processes such as stochastic differential equations or diffusions (SDE's) or Levy processes. -
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Toolbox for handling X-ray transmission image data collected using the Xradia TXM system. We are constantly updating the code to implement other file formats as well - suggestions are welcome. Main articles: -) TXM-Wizard: a program for advanced data collection and evaluation in full-field transmission X-ray microscopy, Journal of Synchrotron Radiation, 19, 281-287. (2012) http://scripts.iucr.org/cgi-bin/paper_yard?
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MatNMR is a highly flexible toolbox for processing 1D and 2D NMR/EPR spectra in MATLAB and creating high-quality 1D, 2D or 3D plots. Fully GUI and/or script-based.
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GlycoPAT
Comprehensive, open-source tool for glycoproteomics MS data analysis
GlycoPAT is a modular, open-source MATLAB based toolbox for shotgun mass spectrometry based glycoproteomics data analysis. This program provides a novel platform for the streamlined analysis of traditional LC-MSn based high-throughput experimental data for the identification of site-specific N- and O-linked glycosylation on various proteins. More details are available at https://www.VirtualGlycome.org/glycopat Source code also available at https://github.com/kaichengub/GlycoPAT If you use this software please cite: Gang Liu, Kai Cheng, Chi Y. ... -
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A set of Matlab functions which compute effect size statistics and (exact) confidence intervals for a wide range of data analysis situations, including two-sample-, oneway-, twoway- and contrast analyses as well as categorical data in tables.
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SmartRoot
Semi-automated root image analysis software
...SmartRoot is an operating system independent freeware based on ImageJ and uses cross-platform standards (XML, SQL, Java) for communication with data analysis softwares. To cite us: Guillaume Lobet, Loïc Pagès and Xavier Draye. A Novel Image Analysis Toolbox Enabling Quantitative Analysis of Root System Architecture. 2011 Plant Physiology, Vol. 157
