Showing 43 open source projects for "python file format interface"

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  • 1
    UnROOT.jl

    UnROOT.jl

    Native Julia I/O package to work with CERN ROOT files objects

    UnROOT.jl is a reader for the CERN ROOT file format written entirely in Julia, without any dependence on ROOT or Python.
    Downloads: 0 This Week
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  • 2
    JLD2

    JLD2

    HDF5-compatible file format in pure Julia

    JLD2 saves and loads Julia data structures in a format comprising a subset of HDF5, without any dependency on the HDF5 C library. JLD2 is able to read most HDF5 files created by other HDF5 implementations supporting HDF5 File Format Specification Version 3.0 (i.e. libhdf5 1.10 or later) and similarly, those should be able to read the files that JLD2 produces. JLD2 provides read-only support for files created with the JLD package. The save and load functions, provided by FileIO, provide a...
    Downloads: 0 This Week
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  • 3
    HDF5.jl

    HDF5.jl

    Save and load data in the HDF5 file format from Julia

    HDF5 stands for Hierarchical Data Format v5 and is closely modeled on file systems. In HDF5, a "group" is analogous to a directory, a "dataset" is like a file. HDF5 also uses "attributes" to associate metadata with a particular group or dataset. HDF5 uses ASCII names for these different objects, and objects can be accessed by Unix-like pathnames, e.g., "/sample1/tempsensor/firsttrial" for a top-level group "sample1", a subgroup "tempsensor", and a dataset "firsttrial". For simple types...
    Downloads: 0 This Week
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  • 4
    JDF.jl

    JDF.jl

    Julia DataFrames serialization format

    ...Collectively, the column files, the metadata file, and the folder is called a JDF "file". JDF.jl is a pure-Julia solution and there are a lot of ways to do nifty things like compression and encapsulating the underlying struture of the arrays that's hard to do in R and Python. E.g. Python's numpy arrays are C objects, but all the vector types used in JDF are Julia data types.
    Downloads: 0 This Week
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  • 5
    Astropy

    Astropy

    Repository for the Astropy core package

    The Astropy Project is a community effort to develop a common core package for Astronomy in Python and foster an ecosystem of interoperable astronomy packages. Astropy is a Python library for use in astronomy. Learn Astropy provides a portal to all of the Astropy educational material through a single dynamically searchable web page. It allows you to filter tutorials by keywords, search for filters, and make search queries in tutorials and documentation simultaneously. The Anaconda Python...
    Downloads: 3 This Week
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  • 6
    RStudio

    RStudio

    RStudio is an integrated development environment (IDE) for R

    RStudio is a powerful, full-featured integrated development environment (IDE) tailored primarily for the R programming language but increasingly supportive of other languages like Python and Julia. It brings together console, editor, plotting, workspace, history, and file-management panes into a unified interface, helping data scientists, statisticians, and analysts to work more productively. The IDE is cross-platform: there are desktop versions for Windows, macOS and Linux, as well as a server version for remote or multi-user deployment via a web browser. ...
    Downloads: 2 This Week
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  • 7
    libCEED

    libCEED

    CEED Library: Code for Efficient Extensible Discretizations

    ...Thus, high-order methods require a new "format" that still represents a linear (or more generally non-linear) operator, but not through a sparse matrix.
    Downloads: 0 This Week
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  • 8
    AWA-Core

    AWA-Core

    Full application for factory, process engineer and Automation..

    NEW -- NEW -- NEW -- NEW -- NEW AWA-Core 2025 is coming with a totally new architecture. The core is now in Client/Server architecture and open to other applications. New interfaces for the server and client sides. Stay tuned !! AWA-Core (Another Way of Automation) is a complete suite that allows engineers, PLC programmers and factory designers to create huge projects for retrieving data, creating graphics, automatic scripts, exports and data links. You can easily manage AWA-Core and...
    Downloads: 14 This Week
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  • 9
    Autoplot

    Autoplot

    Autoplot is an interactive browser for data on the web

    Autoplot is an interactive browser for data on the web. Give Autoplot a URL or local file name and it creates a sensible plot of the data. Autoplot allows you to interactively browse data stored in ascii, .cdf, netcdf, and many other formats. Autoplot's source has been moved to GitHub. Thanks to SourceForge for many years of hosting!
    Downloads: 2 This Week
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  • 10
    Jmol

    Jmol

    An interactive viewer for three-dimensional chemical structures.

    Over 1,000,000 page views per month. Jmol/JSmol is a molecular viewer for 3D chemical structures that runs in four independent modes: an HTML5-only web application utilizing jQuery, a Java applet, a stand-alone Java program (Jmol.jar), and a "headless" server-side component (JmolData.jar). Jmol can read many file types, including PDB, CIF, SDF, MOL, PyMOL PSE files, and Spartan files, as well as output from Gaussian, GAMESS, MOPAC, VASP, CRYSTAL, CASTEP, QuantumEspresso, VMD, and many other...
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    Downloads: 1,149 This Week
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  • 11
    123VCF

    123VCF

    An Intuitive and Efficient Tool for VCF file filtration

    123VCF has been developed to make the filtration step of VCF files efficient and more importantly easy to understand. It can be used in the most important step of whole exome/genome sequencing data analysis in the research and also clinical settings. User manual: https://dl.adbioinformatics.net/123VCF/123VCF_Manual.ver2.pdf If you use 123VCF, please cite its paper: Eidi, M., Abdolalizadeh, S., Moeini, S. et al. 123VCF: an intuitive and efficient tool for filtering VCF files. BMC...
    Downloads: 6 This Week
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  • 12
    sadsa

    sadsa

    SADSA (Software Application for Data Science and Analytics)

    SADSA (Software Application for Data Science and Analytics) is a Python-based desktop application designed to simplify statistical analysis, machine learning, and data visualization for students, researchers, and data professionals. Built using Python for the GUI, SADSA provides a menu-driven interface for handling datasets, applying transformations, running advanced statistical tests, machine learning algorithms, and generating insightful plots — all without writing code.
    Downloads: 1 This Week
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  • 13
    Data Preprocessing Automate

    Data Preprocessing Automate

    Data Preprocessing Automation: A GUI for easy data cleaning & visualiz

    Data Preprocessing Automation is a Python-based GUI application designed to simplify and automate data preprocessing tasks. It allows users to upload Excel files, automatically handle missing values, remove duplicates, and detect and remove outliers using statistical methods. The application provides data visualization tools, including box plots for distribution analysis and scatter plots for exploring relationships between variables. Users can download the processed data for further...
    Downloads: 0 This Week
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  • 14
    SQLBucket

    SQLBucket

    Lightweight library to write, orchestrate and test your SQL ETL

    ...With SQLBucket, you can apply TDD principles when writing data pipelines. To start working, you need to instantiate your SQLBucket core object with the project_folder parameter. That folder will contain all your SQL ETL. The python file where you create your SQLBucket object is also a good place to instantiate your command line interface.
    Downloads: 0 This Week
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  • 15
    Wooey

    Wooey

    A Django app that creates automatic web UIs for Python scripts

    Wooey is a simple web interface to run command line Python scripts. Think of it as an easy way to get your scripts up on the web for routine data analysis, file processing, or anything else. The project was inspired by how simply and powerfully sandman could expose users to a database and by how Gooey turns ArgumentParser-based command-line scripts into WxWidgets GUIs.
    Downloads: 0 This Week
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  • 16
    QuickPlot

    QuickPlot

    Simple user interface for gnuplot aimed for reflectometry data

    Graphical user interface for gnuplot to create publication quality figure very quickly. It supports templates for fast formatting of graphics, different plot styles, insets, axis and label options. One important feature is storing metadata in png and pdf files that can be used to reload any graph saved with QuickPlot.
    Downloads: 0 This Week
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  • 17
    PySchool

    PySchool

    Installable / Portable Python Distribution for Everyone.

    PySchool is a free and open-source Python distribution intended primarily for students who learn Python and data analysis, but it can also used by scientists, engineering, and data scientists. It includes more than 150 Python packages (full edition) including numpy, pandas, scipy, sympy, keras, scikit-learn, matplotlib, seaborn, beautifulsoup4...
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    Downloads: 1,012 This Week
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  • 18
    Open Source Data Quality and Profiling

    Open Source Data Quality and Profiling

    World's first open source data quality & data preparation project

    This project is dedicated to open source data quality and data preparation solutions. Data Quality includes profiling, filtering, governance, similarity check, data enrichment alteration, real time alerting, basket analysis, bubble chart Warehouse validation, single customer view etc. defined by Strategy. This tool is developing high performance integrated data management platform which will seamlessly do Data Integration, Data Profiling, Data Quality, Data Preparation, Dummy Data...
    Downloads: 4 This Week
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  • 19
    Crystalsim -  XRD hkl simulation

    Crystalsim - XRD hkl simulation

    X-ray diffraction (XRD) analysis for hkl simulation of any crystal.

    ...Processed data can be saved as .csv file format. Designed by M Kanagasabapathy, Assistant Professor, Department of Chemistry, Rajus' College, Affiliated to Madurai Kamaraj University Rajapalayam (TN) India email: rrcmks(at)gmail.com
    Downloads: 11 This Week
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  • 20
    NOVA

    NOVA

    Analysis and visualization of complexome profiling data.

    NOVA is a program designed to analysis complexome profiling data (Heide et al., 2012). A graphical user interface (GUI) provides various visualization tools, such as heat maps and 2D plots. Several hierarchical clustering algorithms (e.g., single linkage, average linkage, Wards linkage), different distance measures (e.g., Euclidean distance, Manhattan distance, Pearson distance), and various normalization techniques are implemented. Many additional functions like zooming, searching for proteins, image export, and automatic file format recognition support intuitive handling for biologists. ...
    Downloads: 4 This Week
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  • 21
    NCVTK: A VTK-based tool to visualize data stored in the NetCDF file format.
    Downloads: 0 This Week
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  • 22
    SBML2LaTeX

    SBML2LaTeX

    A documentation and report generator for systems biological models

    SBML2LATEX is a tool to convert files in the System Biology Markup Language SBML) format into LATEX files. A convenient online version is available, which allows the user to directly generate report from SBML in form of PDF or TeX, which can be further processed to various file types including DVI, PS, EPS, GIF, JPG, or PNG. SBML2LATEX can also be downloaded and used locally in batch mode or interactively with its Graphical User Interface or several command line options. ...
    Downloads: 0 This Week
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  • 23
    DSTK - DataScience ToolKit

    DSTK - DataScience ToolKit

    DSTK - DataScience ToolKit for All of Us

    ...DSTK is written in C#, Java and Python to interface with R, NLTK, and Weka. It can be expanded with plugins using R Scripts. We have also created plugins for more statistical functions, and Big Data Analytics with Microsoft Azure HDInsights (Spark Server) with Livy. License: R, RStudio, NLTK, SciPy, SKLearn, MatPlotLib, Weka, ... each has their own licenses.
    Downloads: 0 This Week
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  • 24
    XParallax viu

    XParallax viu

    Software for automated astrometry

    XParallax viu is a free software tool for automated astrometric data reduction of astronomic CCD images. It helps astronomers to perform an accurate astrometric reduction of dozens ore even hundreds of images which can be used in subsequent data analysis process. Fit headers generated by this software are fully compatible with other commonly used image utilities like SAO DS9 or Aladin Sky Atlas.
    Downloads: 1 This Week
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  • 25
    Visualization of Protein-Ligand Graphs

    Visualization of Protein-Ligand Graphs

    Compute protein graphs. Moved to https://github.com/MolBIFFM/PTGLtools

    NOTE: Project moved to https://github.com/MolBIFFM/PTGLtools. The Visualization of Protein-Ligand Graphs (VPLG) software package computes and visualizes protein graphs. It works on the super-secondary structure level and uses the atom coordinates from PDB files and the SSE assignments of the DSSP algorithm. VPLG is command line software. If you do not like typing commands, try our PTGL web server: http://ptgl.uni-frankfurt.de/
    Downloads: 0 This Week
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