Search Results for "kinetics"
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Showing 3 open source projects for "kinetics"
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Catalyst.jl
Chemical reaction network and systems biology interface
...Symbolic ReactionSystems can be used to generate ModelingToolkit-based models, allowing the easy simulation and parameter estimation of mass action ODE models, Chemical Langevin SDE models, stochastic chemical kinetics jump process models, and more. Generated models can be used with solvers throughout the broader SciML ecosystem, including higher-level SciML packages (e.g. for sensitivity analysis, parameter estimation, machine learning applications, etc). -
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BriPy
A BRIC-seq data analysis package written in Python.
...-What is BriPy? BriPy package is a BRIC-seq data analysis tool written in Python. It can calculate RNA half-life for each transcript and draw graphs describing the kinetics of RNA decay. In the future, it will provide several useful modules(e.g. calculating RPKM of each transcript from BAM file or ELAND output file). -Prerequisites To use BriPy package, you will need Python and the following extension packages. Python2.7 or higher NumPy SciPy Matplotlib -
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Solvere4D is a powerful, open-source, freely available post-processor that makes it easy for anyone to generate 3D animations of 3D rigid body kinematics and kinetics, with many visualization options.
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