Search Results for "package"
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Showing 59 open source projects for "package"
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1
harmonypy
Integrate multiple high-dimensional datasets with fuzzy k-means
Harmony is an algorithm for integrating multiple high-dimensional datasets. harmonypy is a port of the harmony R package by Ilya Korsunsky. Harmony is a general-purpose R package with an efficient algorithm for integrating multiple data sets. It is especially useful for large single-cell datasets such as single-cell RNA-seq. -
2
Astropy
Repository for the Astropy core package
...The Anaconda Python Distribution includes Astropy and is the recommended way to install both Python and the Astropy package. The astropy package contains key functionality and common tools needed for performing astronomy and astrophysics with Python. It is at the core of the Astropy Project, which aims to enable the community to develop a robust ecosystem of affiliated packages covering a broad range of needs for astronomical research, data processing, and data analysis. -
3
leafmap
A Python package for interactive mapping and geospatial analysis
A Python package for geospatial analysis and interactive mapping in a Jupyter environment. Leafmap is a Python package for interactive mapping and geospatial analysis with minimal coding in a Jupyter environment. It is a spin-off project of the geemap Python package, which was designed specifically to work with Google Earth Engine (GEE). However, not everyone in the geospatial community has access to the GEE cloud computing platform. -
4
CleanVision
Automatically find issues in image datasets
...CleanVision helps you automatically identify common types of data issues lurking in image datasets. This package currently detects issues in the raw images themselves, making it a useful tool for any computer vision task such as: classification, segmentation, object detection, pose estimation, keypoint detection, generative modeling, etc. -
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geemap
A Python package for interactive geospaital analysis and visualization
A Python package for interactive geospatial analysis and visualization with Google Earth Engine. Geemap is a Python package for geospatial analysis and visualization with Google Earth Engine (GEE), which is a cloud computing platform with a multi-petabyte catalog of satellite imagery and geospatial datasets. During the past few years, GEE has become very popular in the geospatial community and it has empowered numerous environmental applications at local, regional, and global scales. ... -
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Bayesian Optimization
Python implementation of global optimization with gaussian processes
This is a constrained global optimization package built upon bayesian inference and gaussian process, that attempts to find the maximum value of an unknown function in as few iterations as possible. This technique is particularly suited for optimization of high cost functions, situations where the balance between exploration and exploitation is important. More detailed information, other advanced features, and tips on usage/implementation can be found in the examples folder. -
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Cleanlab
The standard data-centric AI package for data quality and ML
cleanlab helps you clean data and labels by automatically detecting issues in a ML dataset. To facilitate machine learning with messy, real-world data, this data-centric AI package uses your existing models to estimate dataset problems that can be fixed to train even better models. cleanlab cleans your data's labels via state-of-the-art confident learning algorithms, published in this paper and blog. See some of the datasets cleaned with cleanlab at labelerrors.com. This package helps you find label issues and other data issues, so you can train reliable ML models. ... -
8
atpbar
Progress bars for threading and multiprocessing tasks on terminal
Progress bars for threading and multiprocessing tasks on the terminal and Jupyter Notebook. atpbar can display multiple progress bars simultaneously growing to show the progresses of iterations of loops in threading or multiprocessing tasks. atpbar can display progress bars on the terminal and Jupyter Notebook. atpbar can be used with Mantichora. atpbar started its development in 2015 as part of Alphatwirl. atpbar prevented physicists from terminating their running analysis codes, which would take many hours to complete, by showing progress bars indicating their codes were actually running. The progress bars have saved the physicists countless hours in total. atpbar had been the sub-package progress of alphatwirl until it became an independent package, with the name atpbar, in February 2019. -
9
Population Shift Monitoring
Monitor the stability of a Pandas or Spark dataframe
...Advanced users can leverage popmon's modular data pipeline to customize their workflow. Visualization of the pipeline can be useful when debugging or for didactic purposes. There is a script included with the package that you can use. -
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10
TensorBoardX
tensorboard for pytorch (and chainer, mxnet, numpy, etc.)
The SummaryWriter class provides a high-level API to create an event file in a given directory and add summaries and events to it. The class updates the file contents asynchronously. This allows a training program to call methods to add data to the file directly from the training loop, without slowing down training. TensorboardX now supports logging directly to Comet. Comet is a free cloud based solution that allows you to automatically track, compare and explain your experiments. It adds a... -
11
pydna
Clone with Python! Data structures for double stranded DNA
...Planning genetic constructs with many parts and assembly steps, such as recombinant metabolic pathways, are often difficult to properly document as is evident from the poor state of documentation in the scientific literature. The pydna python package provide a human-readable formal description of cloning and genetic assembly strategies in Python which allow for simulation and verification. Pydna can be used as executable documentation for cloning. -
12
PyVista
3D plotting and mesh analysis through a streamlined interface
...PyVista is a helper module for the Visualization Toolkit (VTK) that takes a different approach on interfacing with VTK through NumPy and direct array access. This package provides a Pythonic, well-documented interface exposing VTK’s powerful visualization backend to facilitate rapid prototyping, analysis, and visual integration of spatially referenced datasets. This module can be used for scientific plotting for presentations and research papers as well as a supporting module for other mesh-dependent Python modules. ... -
13
classic.tplx
A more accurate representation of jupyter notebooks
...If something doesn't exist in the original notebook then it doesn't belong in the conversion. As of nbconvert 5.5.0, the majority of these improvements have been merged into nbconvert's default template. Version 3.x of this package will continue to support nbconvert 5.5.0 and lower, whereas in the future version 4.x will only support nbconvert 5.5.0 and newer. Versions 3.x, and 4.x will overlap support for nbconvert version 5.5.0. -
14
Apache Airflow Provider
Great Expectations Airflow operator
Due to apply_default decorator removal, this version of the provider requires Airflow 2.1.0+. If your Airflow version is 2.1.0, and you want to install this provider version, first upgrade Airflow to at least version 2.1.0. Otherwise, your Airflow package version will be upgraded automatically, and you will have to manually run airflow upgrade db to complete the migration. This operator currently works with the Great Expectations V3 Batch Request API only. If you would like to use the operator in conjunction with the V2 Batch Kwargs API, you must use a version below 0.1.0. This operator uses Great Expectations Checkpoints instead of the former ValidationOperators. ... -
15
GemGIS
Spatial data processing for geomodeling
...It is capable of preprocessing spatial data such as vector data (shape files, geojson files, geopackages,…), raster data (tif, png,…), data obtained from online services (WCS, WMS, WFS) or XML/KML files (soon). Preprocessed data can be stored in a dedicated Data Class to be passed to the geomodeling package GemPy in order to accelerate the model-building process. Postprocessing of model results will allow export from GemPy to geoinformation systems such as QGIS and ArcGIS or to Google Earth for further use. -
16
HyperTools
A Python toolbox for gaining geometric insights
HyperTools is a library for visualizing and manipulating high-dimensional data in Python. It is built on top of matplotlib (for plotting), seaborn (for plot styling), and scikit-learn (for data manipulation). Functions for plotting high-dimensional datasets in 2/3D. Static and animated plots. Simple API for customizing plot styles. Set of powerful data manipulation tools including hyperalignment, k-means clustering, normalizing and more. Support for lists of Numpy arrays, Pandas dataframes,... -
17
ClearML
Streamline your ML workflow
...It is designed as an end-to-end MLOps suite allowing you to focus on developing your ML code & automation, while ClearML ensures your work is reproducible and scalable. The ClearML Python Package for integrating ClearML into your existing scripts by adding just two lines of code, and optionally extending your experiments and other workflows with ClearML powerful and versatile set of classes and methods. The ClearML Server storing experiment, model, and workflow data, and supports the Web UI experiment manager, and ML-Ops automation for reproducibility and tuning. ... -
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Cookiecutter Data Science
Project structure for doing and sharing data science work
A logical, reasonably standardized, but flexible project structure for doing and sharing data science work. When we think about data analysis, we often think just about the resulting reports, insights, or visualizations. While these end products are generally the main event, it's easy to focus on making the products look nice and ignore the quality of the code that generates them. Because these end products are created programmatically, code quality is still important! And we're not talking... -
19
Luigi
Python module that helps you build complex pipelines of batch jobs
Luigi is a Python (3.6, 3.7, 3.8, 3.9 tested) package that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualization, handling failures, command line integration, and much more. The purpose of Luigi is to address all the plumbing typically associated with long-running batch processes. You want to chain many tasks, automate them, and failures will happen. -
20
IPyPlot
Fast and efficient plotting of images inside Python Notebooks
IPyPlot is a small python package offering fast and efficient plotting of images inside Python Notebooks. It's using IPython with HTML for faster, richer and more interactive way of displaying big numbers of images. -
21
xrayutilities
a package with useful scripts for X-ray diffraction physicists
xrayutilities is a python package used to analyze x-ray diffraction data. It can support with performing diffraction experiments and used for common steps in the data analysis. It can read experimental data from several data formats (spec, edf, xrdml, ...); convert them to reciprocal space for arbitrary goniometer geometries and different detector systems (point, linear as well as area detectors); for further processing the data can be gridded (transformed to a regular grid). ... -
22
relax
Molecular dynamics by NMR data analysis
The software package 'relax' is designed for the study of molecular dynamics through the analysis of experimental NMR data. Organic molecules, proteins, RNA, DNA, sugars, and other biomolecules are all supported. It supports exponential curve fitting for the calculation of the R1 and R2 relaxation rates, calculation of the NOE, reduced spectral density mapping, the Lipari and Szabo model-free analysis, study of domain motions via the N-state model and frame order dynamics theories using anisotropic NMR parameters such as RDCs and PCSs, the investigation of stereochemistry in dynamic ensembles, and the analysis of relaxation dispersion data. -
23
dbt-re-data
re_data - fix data issues before your users & CEO would discover them
...Currently, re_data focuses on observing the dbt project (together with underlaying data warehouse - Postgres, BigQuery, Snowflake, Redshift). Data transformations in re_data are implemented and exposed as models & macros in this dbt package. Gather all relevant outputs about your data in one place using our cloud. Invite your team and debug it easily from there. Go back in time, and see your past metadata. Set up Slack notifications to always know when a new report is produced or an existing one got updated. -
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Mara Pipelines
A lightweight opinionated ETL framework, halfway between plain scripts
This package contains a lightweight data transformation framework with a focus on transparency and complexity reduction. Data integration pipelines as code: pipelines, tasks and commands are created using declarative Python code. PostgreSQL as a data processing engine. Extensive web ui. The web browser as the main tool for inspecting, running and debugging pipelines. -
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Python Laboratory Operations Toolkit
many useful snippets for using python in a laboratory
...Includes support for such protocols as VXI-11 (and its extension, LXI), Vernier LabPro (now very old), and National Instruments DSTP (now very old). Also includes data analysis and modelling tidbits. Python3 updates are on the way in the very near future for the biggest packages. the vxi11 package is fully up-to-date, although see the blog post about python 3.13
