Showing 533 open source projects for "python::module"

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  • 1

    Pyclamp

    A Python package used to extract and analyse electrophysiological data

    Pyclamp is Python package used to extract and analyse electrophysiological data. A graphical user interface has been developed to allow a user to run the pack- age without requiring any knowledge of Python code. Presently, Pyclamp is designed to perform very specific forms of analysis on evoked synaptic responses: Data analysis (under development) : This is a highly user-interactive en-vironment that can be used to discriminate synaptic events, obtain various measures of their kinetics and size, and output the results. ...
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  • 2

    Py3DN

    Morphometric analysis and visualization of the 3D structure of neurons

    ...Above all, it provides a flexible environment where new types of analyses can be easily set up allowing total freedom to test new hypotheses. The application was developed in Python and uses Blender (an open source program) to produce detailed 3D representations of raw and processed data. Py3DN is described in the paper: Aguiar P et al, "Versatile morphometric analysis and visualization of the three-dimensional structure of neurons", Neuroinformatics, 2013, 11(4):393-403 doi: 10.1007/s12021-013-9188-z
    Downloads: 0 This Week
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  • 3
    Creates interactive plots of data lines over a time scale. Automatic detection of input format and scale will result in instantaneous results without any need for configuration.
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  • 4
    RoiView
    Explore InSAR data and more
    Downloads: 0 This Week
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  • 5
    wxRays

    wxRays

    Visual x-ray data processor

    Visual x-ray data processor. The routine, writed in Python using wxPython, NumPy, SciPy and mathplotlib libraries for practical and educational purpose.
    Downloads: 0 This Week
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  • 6
    Analysis software for Nbody/SPH or SPH simulations (e.g. performed with Gadget II). See http://sourceforge.net/apps/wordpress/hyplot/about and http://sourceforge.net/apps/trac/hyplot/wiki for more information.
    Downloads: 0 This Week
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  • 7

    ExAM-Exome_Analysis_And_Mining

    A whole exome sequencing analysis package and its graphical interface

    During the past few years, whole exome sequencing has imposed itself for genetic research, largely due to its use for detection of causative mutations responsible for Mendelian disorders. As a consequence of their power and of the rapidly decreasing cost of these technologies, massive amount of exome sequencing data are generated and becoming available to a broadening community of scientists. However, these data remain difficult to analyze and interpret by the general scientific community,...
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  • 8
    The MeVisLab Community project provides add-on modules that extend the functionality of the MeVisLab software. The modules are provided and maintained by the MeVisLab developer community and can be compiled with the public MeVisLab SDK.
    Downloads: 0 This Week
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  • 9
    iTag

    iTag

    Tag images using various categories and modifiers

    iTag has been designed for researchers that rely on photographic census techniques of animals that are hard to detect via image recognition algorithms and was originally developed for counting Grey Seals in the German wadden sea during March 2013. It has since then been further expanded and has now reached beta status. iTag allows Users to define up to 9 different categories and name them accordingly. In addition, 4 modifiers are available to further increase the options during a tagging...
    Downloads: 2 This Week
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  • 10

    ipcvis

    Visualize Inter Process Communication

    ...Quick start on Ubuntu/Debian: # apt-get install graphviz python-pygraphviz # ./ipcvis.py
    Downloads: 0 This Week
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  • 11
    ...The visual interface allows users to design networks using various biological "parts". Models can include modules and multiple cells. Users can program new functions using C or Python. www.tinkercell.
    Downloads: 37 This Week
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  • 12

    Python Open Source Echosounder Toolkit

    real-time visualization of network data broadcasts from echosounders

    During acoustic surveys of marine ecosystems, fisheries scientists need to quickly interpret large amounts of echosounder data and decide whether and where to sample for targeted organisms. The Python Open Source Echosounder Toolkit (pyOSET) was designed to facilitate this process by providing near real-time visualization of network data broadcasts from multiple echosounder systems, and to serve as a framework for implementation of algorithms to detect, locate, and identify fish or the seabed. An Alpha release of the software is available under the GNU General Public License, version 2. ...
    Downloads: 0 This Week
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  • 13
    UV-CDAT

    UV-CDAT

    Ultrascale Visualization Climate Data Analysis Tools

    Ultrascale Visualization Climate Data Analysis Tools (UV-CDAT), is a powerful and complete front-end to a rich set of visual-data exploration and analysis capabilities well suited for climate-data analysis problems.
    Downloads: 5 This Week
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  • 14

    Data analysis for ADEXL

    Create Excel reports from results of Cadence ADE-XL simulations

    *** Required files from "Excel COM API for Python" project *** The scripts allows post processing of data saved in CSV format from "Detail - Transposed" view of ADE-XL
    Downloads: 0 This Week
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  • 15
    This is a sophisticated & integrated simulation and analysis environment for dynamical systems models of physical systems (ODEs, DAEs, maps, and hybrid systems). It supports symbolic math, optimization, continuation, data analysis, biological apps...
    Downloads: 4 This Week
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  • 16
    MSCViewer

    MSCViewer

    A tool for visualization and analysis of logs as sequence diagrams

    ...The diagram is fully interactive: entity can be added/removed from the diagram and shuffled; events can be filtered, searched, highlighted and annotated with comments. MSCViewer features integration with a Python interpreter which allows writing Python scripts interacting with the model. This powerful feature can be used to automate validatation of distributed control flows, integrate with graphing infrastructure, etc.
    Downloads: 0 This Week
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  • 17
    BioImageXD - free open source software for analysis, processing and 3D rendering of multi dimensional, multi data channel, time series image data from microscopy and other sources.
    Downloads: 3 This Week
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  • 18
    RPy (R from Python)
    RPy is a very simple, yet robust, Python interface to the R Programming Language. It can manage all kinds of R objects and can execute arbitrary R functions (including the graphic functions).
    Downloads: 10 This Week
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  • 19
    QuickNXS

    QuickNXS

    Polarized ToF reflectivity raw data analysis tool

    Data evaluation tool for the magnetism reflectometer at the spallation neutron source (BL-4A@SNS). Reads raw nexus files (HDF5) of histogrammed or event mode data to create reflectivity curves and 2D Q-maps.
    Downloads: 0 This Week
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  • 20
    scipion-xmipp

    scipion-xmipp

    Image processing framework to integrate EM software packages.

    Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM). It integrates several software packages and presents an unified interface for both biologists and developers. Scipion allows to execute workflows combining different software tools, while taking care of formats and conversions. Additionally, all steps are tracked and can be reproduced later on. Xmipp is a well-known package in the EM image processing. It is integrated...
    Downloads: 0 This Week
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  • 21
    PanelCheck is an easy-to-use software tool for visualization of sensory profiling data using different types of plots. The joint information from the implemented plots provide detailed insight into assessor and panel performance.
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    Downloads: 41 This Week
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  • 22
    MicrobeGPS

    MicrobeGPS

    The Explorative Taxonomic Profiling Tool for Metagenomic Data

    MicrobeGPS is a bioinformatics tool for the analysis of metagenomic sequencing data. The goal is to profile the composition of metagenomic communities as accurately as possible and present the results to the user in a convenient manner. One main focus is reliability: the tool calculates quality metrics for the estimated candidates and allows the user to identify false candidates easily.
    Downloads: 0 This Week
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  • 23
    ADOMA
    ADOMA stands for: Alternative Display Of Multiple Alignment. ADOMA can create four different displays of a multiple sequence alignment: a ClustalW alignment in HTML format, a simplified ClustalW alignment in HTML and/or txt format and a colored ClustalW alignment in HTML format. For examples of these outputfiles check the screenshots. ADOMA uses ClustalW to create the multiple alignment from DNA or protein sequences and displays them slightly different than the normal output of ClustalW....
    Downloads: 0 This Week
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  • 24

    SCaVis

    Scientific Computation and Visualization Environment

    SCaVis is an environment for scientific computation, data analysis and data visualization for scientists, engineers and students. The program is fully multiplatform (100% Java) and integrated with Java and a number of scripting languages: Jython (Python), Groovy, JRuby, BeanShell. SCaVis can be used to plot functions and data in 2D and 3D, perform statistical tests, data mining, numeric computations, function minimization, linear algebra, solving systems of linear and differential equations. Linear, non-linear and symbolic regression are also available. Elements of symbolic computations using Octave/Matlab scripting are supported. ...
    Downloads: 0 This Week
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  • 25
    MicroView
    MicroView is a 2D/3D image viewer and analysis tool. It is written in Python and uses VTK for all of its graphical capabilities.
    Downloads: 9 This Week
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