Search Results for "gnu/linux" - Page 50
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Showing 2817 open source projects for "gnu/linux"
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An open source workbench for chemo- and bioinformatics built on the Eclipse Rich Client Platform (RCP).
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QuickNGS
Next-Generation Sequencing workflow system
QuickNGS is a software for efficient and highly reproducible data analysis for Next-Generation Sequencing. -
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Taurus
A python based User Interface library.
The Taurus Project has *moved* to: https://github.com/taurus-org/taurus This SourceForge page is *outdated* and kept for historical reference only. Taurus is a python framework for control and data acquisition CLIs and GUIs in scientific/industrial environments. It supports multiple control systems or data sources: Tango, EPICS, ... New control system libraries and data sources can be integrated through plugins. -
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ExAws
A flexible, easy to use set of clients AWS APIs for Elixir
ExAws is a comprehensive Elixir client library for interfacing with AWS services. It provides low-level request builders for nearly all AWS APIs—like S3, EC2, Lambda, DynamoDB, SQS, SES, Route 53, and more—while supporting streaming, request configuration overrides, telemetry, flexible HTTP clients, and codecs. Its modular architecture enables importing only the services you need with separate packages (e.g., ex_aws_s3, ex_aws_ec2). -
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CI Tools Demo
Docker Infrastructure via docker-compose
This repository provides a Docker-powered CI tools demo environment via a single command with docker-compose. It assembles popular CI/CD components—Jenkins, SonarQube, Nexus, GitLab, and Selenium Grid—each running in separate containers, facilitating self-contained integration testing or workshops. It’s not intended for production but serves as a practical demo or launchpad for containerized CI stacks. Each tool runs in an isolated container for modular experimentation. Maintained primarily... -
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colorview2d
Extendible 2D color plotting tool.
Visualize and analyze 3D data files using 2D colorplots. Inspired by spyview. Written in python. -
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Zika-RNAseq-Pipeline
An open RNA-Seq data analysis pipeline tutorial
RNA-seq analysis is becoming a standard method for global gene expression profiling. However, open and standard pipelines to perform RNA-seq analysis by non-experts remain challenging due to the large size of the raw data files and the hardware requirements for running the alignment step. Here we introduce a reproducible open source RNA-seq pipeline delivered as an IPython notebook and a Docker image. The pipeline uses state-of-the-art tools and can run on various platforms with minimal... -
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Jedule
Jedule is Yet another Gantt Chart Viewer
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Gimias
Graphical Interface for Medical Image Analysis and Simulation
GIMIAS is a workflow-oriented environment for solving advanced biomedical image computing and individualized simulation problems, which is extensible through the development of problem-specific plug-ins. In addition, GIMIAS provides an open source framework for efficient development of research and clinical software prototypes integrating contributions from the Physiome community while allowing business-friendly technology transfer and commercial product development. -
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PyVib2 is a program for analyzing vibrational motion and vibrational spectra. It is an open source "all-in-one" solution for scientists working in the field of vibrational spectroscopy (Raman and IR) and vibrational optical activity (ROA and VCD).
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horizon
Horizon is a realtime, open-source backend for JavaScript apps
Horizon is an open-source developer platform for building sophisticated realtime apps. It provides a complete backend that makes it dramatically simpler to build, deploy, manage, and scale engaging JavaScript web and mobile apps. Horizon is extensible, integrates with the Node.js stack, and allows building modern, arbitrarily complex applications. While technologies like RethinkDB and WebSocket make it possible to build engaging realtime apps, empirically there is still too much friction for... -
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iCubing
Several OLAP algorithms, data structures and HPC OLAP versions
OLAP technology is very useful for decision makers and data mining tools with BIG data. In this direction, we implement iCubing project with several multidimensional data cube approaches for cube indexing, querying, updating and mining. There are also several cube types, i.e. alphanumeric cubes, text cubes with unstructured data and geo cube with geo types, dimensions, measures and hierarchies, so the OLAP area continues a hard challenge after more than 20 years of the seminal paper of Jim... -
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MerDAQ
A DAQ solution in Python 2 for your Ardruino
MerDAQ is a data acquisition GUI and other tools for collecting and storing time dependent. Originally designed to collect 4 temperature data vs. time and plot one of the temperatures in real time with matplotlib. Ideal for use with Arduino. -
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The objective of this project is to provide an innovative tool for visualization of multiples genomes. Written in Java, it presents a simple and intuitive user interface to view and manipulate the relationships between groups of genes.
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FalansterCity3D
3D urban environment renderer : browser-app ; as well as a GTA clone
Have You ever wondered what would be like the weirdest Grand Theft Auto clone ever made? Well, we are pretty close with the FalansterCity3D urban environment rendering-engine where You can also drive the cars in the city. And moreover, it's a browser-game, so it runs instantly in any internet-browser. Why not try it directly at the link below? http://nerdofalgorithms.altervista.org/secondary_pages/page_11.php Even on smarthones or whatever, as long as it has a browser and sufficient... -
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SHORE is a Next Generation Sequencing data analysis suite. Please find the manual at http://shore.sourceforge.net/wiki
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Freeware radionic* operating system (rOS) for usb-carriers. The installation is enough to unpack the archive to any such carrier and inserted into the usb-connector to gain access to it. In contrast to the classical understanding of the term "operating system", this product is a non-material (mental) set of programs based on advanced artificial intelligence, a virtual person pretending pretty girl - Crista.
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XASTIR
Multiplatform Ham Radio APRS and Mapping Program
NOTE: Code commits are FROZEN on SourceForge: New code is now at <http://github.com/Xastir/Xastir>. Real-time tracking & messaging of stations via radio/internet APRS data streams, w/125 map formats supported. Linux/FreeBSD/Solaris/MacOSX/Windows in any of 7 languages. Can also be used for mobile mapping w/GPS. MAILING LISTS ARE AT: PROJECT->WEB SITE. -
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Yggdrasill
3D Evolutionary Tree Visualization
Yggdrasill is a 3D phylogenetic tree visualization software based on the Unity 5 engine. Intended for educational and scientific purposes this demonstration release allows to display and explore evolutionary relationships between different terrestrial vertebrate species. Currently available features include procedural tree generation of evolutionary data provided by the Tree of Life (ToL) Web Project (http://tolweb.org/tree/), full three dimensional camera controls as well as a web... -
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Waterloo
Java-based scientific graphics
Java-based scientific graphics with support for Java, Groovy, MATLAB, Python, the R statistical environment, Scala and SciLab. -
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Ogles strives to provide an open source data model for neuroscientific data visualization and analytics. Ogles started out as a planning system for frame based stereotactic neurosurgery. Ogles(1) is discontinued. Release candidate (RC) is Ogles2b. Ogles is accompanied by a simple DICOM reader and NIfTI converting tool (Sdr2).
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Crygr
Compare and visualize charge densities from various file formats.
This project is a small program using Qt for calculation and visualization of electron charge densities in crystals and molecules. It can create a 2D plane of charge densities or create a 1D representation of the charge densities along a given line, in both cases it can also export the graphical representations to various image formats. The program can import various file formats such as space 3D grids of charge density values, created in a quantum chemistry programs Gaussian, Crystal and... -
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SPRITE
Parallel SNP detection pipeline
SPRITE is an open-source software package providing a parallel implementation of the Single Nucleotide Polymorphisms (SNP) detection genomic data analysis workflow. It consists of three tools: PRUNE for read alignment, SAMPA for intermediate file processing, and PARSNIP for parallel SNP calling. -
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The international SBGN project aims to bring consistency and uniformity to the graphical expression of network diagrams in biology, in the same way that electronic circuit diagrams are standardized in electrical engineering.
