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Showing 98 open source projects for "structure"
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CausalInference.jl
Causal inference, graphical models and structure learning in Julia
Julia package for causal inference and analysis, graphical models and structure learning. This package contains code for the PC algorithm and the extended FCI algorithm, the score based greedy equivalence search (GES) algorithm, the Bayesian Causal Zig-Zag sampler and a function suite for adjustment set search. -
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Cookiecutter Data Science
Project structure for doing and sharing data science work
A logical, reasonably standardized, but flexible project structure for doing and sharing data science work. When we think about data analysis, we often think just about the resulting reports, insights, or visualizations. While these end products are generally the main event, it's easy to focus on making the products look nice and ignore the quality of the code that generates them. Because these end products are created programmatically, code quality is still important! -
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Obsidian Visual Skills Pack
Generate Canvas, Excalidraw, and Mermaid diagrams from text
LLM-TLDR is a Python-based tool designed to dramatically reduce the amount of code a large language model needs to read by extracting the essential structure and context from a codebase and presenting only the most relevant parts to the model. Traditional approaches often dump entire files into a model’s context, which quickly exceeds token limits; LLM-TLDR instead indexes project structure, traces dependencies, and summarizes code in a way that preserves semantic relevance while shrinking input size by up to 95 %. ... -
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MultilayerGraphs.jl
Julia package for the creation and analysis of multilayer graphs
MultilayerGraphs.jl is a Julia package for the creation, manipulation and analysis of the structure, dynamics and functions of multilayer graphs. A multilayer graph is a graph consisting of multiple standard subgraphs called layers which can be interconnected through bipartite graphs called interlayers composed of the vertex sets of two different layers and the edges between them. The vertices in each layer represent a single set of nodes, although not all nodes have to be represented in every layer. -
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FileTrees.jl
Parallel file processing made easy
Easy everyday parallelism with a file tree abstraction. Read a directory structure as a Julia data structure, (lazy-)load the files, apply map and reduce operations on the data while not exceeding available memory if possible. Make up a file tree in memory, create some data to go with each file (in parallel), write the tree to disk (in parallel). FileTrees is a set of tools to lazy-load, process and save file trees. -
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MolecularGraph.jl
Graph-based molecule modeling toolkit for cheminformatics
MolecularGraph.jl is a graph-based molecule modeling and chemoinformatics analysis toolkit fully implemented in Julia. -
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MarketData.jl
Time series market data
The MarketData package provides open-source financial data for research and testing. The data is from Quandl and is free end-of-day stock data. It is public domain without restrictions. The TimeSeries TimeArray data structure is used to store the data, but conversion to other data structures, including DataFrames and AxisArrays, is supported. -
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Outerbase
A lightweight Database GUI in your browser
Outerbase Studio is an open-source, browser-based database GUI designed for simplicity and versatility. It supports connecting to various relational databases, providing an intuitive interface for managing and querying data without the need for complex setups. -
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Symfony PropertyInfo
Extracts information about PHP class' properties using metadata
Symfony PropertyInfo is a component that extracts information about the properties of PHP classes, such as their names, types, visibility, and documentation. It is particularly useful in scenarios like serialization, form generation, and validation, where understanding the structure of an object is essential. PropertyInfo can fetch data from PHPDoc annotations, reflection, and type hints, offering flexible integration with Symfony and other systems. -
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EAGO.jl
A development environment for robust and global optimization
...EAGO is a deterministic global optimizer designed to address a wide variety of optimization problems, emphasizing nonlinear programs (NLPs), by propagating McCormick relaxations along the factorable structure of each expression in the NLP. Most operators supported by modern automatic differentiation (AD) packages (e.g., +, sin, cosh) are supported by EAGO and a number of utilities for sanitizing native Julia code and generating relaxations on a wide variety of user-defined functions have been included. Currently, EAGO supports problems that have a priori variable bounds defined and have differentiable constraints. -
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Milvus
Vector database for scalable similarity search and AI applications
Milvus is an open-source vector database built to power embedding similarity search and AI applications. Milvus makes unstructured data search more accessible, and provides a consistent user experience regardless of the deployment environment. Milvus 2.0 is a cloud-native vector database with storage and computation separated by design. All components in this refactored version of Milvus are stateless to enhance elasticity and flexibility. Average latency measured in milliseconds on trillion... -
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Architecture as a code
Visualize, collaborate, and evolve the software architecture
Architecture as a code is an open-source modeling language and toolkit that enables software teams to describe, visualize, collaborate on, and maintain software architecture as code. Inspired by the C4 Model and other architectural DSLs, LikeC4 lets you define your system’s structure in a textual DSL and then automatically generate consistent diagrams that reflect that design, ensuring that architecture documentation stays in sync with source code changes. The project includes command-line tooling, IDE integrations, live preview servers, and diagram exporters, letting developers instantly see architectural diagrams update as the model evolves. ... -
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PowerSimulations.jl
Julia for optimization simulation and modeling of PowerSystems
...The flexible modeling framework is enabled through a modular set of capabilities that enable scalable power system analysis and exploration of new analysis methods. The modularity of PowerSimulations results from the structure of the simulations enabled by the package. Simulations define a set of problems that can be solved using numerical techniques. -
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Common Core Ontologies
The Common Core Ontology Repository
The Common Core Ontologies (CCO) comprise twelve ontologies that are designed to represent and integrate taxonomies of generic classes and relations across all domains of interest. CCO is a mid-level extension of Basic Formal Ontology (BFO), an upper-level ontology framework widely used to structure and integrate ontologies in the biomedical domain (Arp, et al., 2015). BFO aims to represent the most generic categories of entity and the most generic types of relations that hold between them, by defining a small number of classes and relations. CCO then extends from BFO in the sense that every class in CCO is asserted to be a subclass of some class in BFO, and that CCO adopts the generic relations defined in BFO (e.g., has_part) (Smith and Grenon, 2004). ... -
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CellTypist
A tool for semi-automatic cell type classification, harmonization
...Harmonization, match and harmonize cell types defined by independent datasets. integration, integrate cell and cell types with supervision from harmonization. CellTypist recapitulates cell type structure and biology of independent datasets. Regularised linear models with Stochastic Gradient Descent provide a fast and accurate prediction. Scalable and flexible. Python-based implementation is easy to integrate into existing pipelines. A community-driven encyclopedia for cell types. -
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Discord.SortedSet
Elixir SortedSet backed by a Rust-based NIF
SortedSet NIF is a performant and reliable sorted set data structure for Elixir, implemented in Rust using the Rustler crate to take advantage of native performance while maintaining seamless integration with the BEAM ecosystem. It provides ordering and uniqueness guarantees, with all terms stored according to Elixir’s built-in sorting rules. Internally, it uses a vector of vectors layout rather than a single vector to minimize costly reallocations, allowing efficient bucket pointer copying instead of expensive term copying during growth. ... -
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LinearSolve.jl
High-Performance Unified Interface for Linear Solvers in Julia
LinearSolve.jl is a unified interface for the linear solving packages of Julia. It interfaces with other packages of the Julia ecosystem to make it easy to test alternative solver packages and pass small types to control algorithm swapping. It also interfaces with the ModelingToolkit.jl world of symbolic modeling to allow for automatically generating high-performance code. Performance is key: the current methods are made to be highly performant on scalar and statically sized small problems,... -
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city-roads
Visualization of all roads within any city
...Because road topology reflects historical, geographic, and planning decisions, the resulting images serve as both analytical tools and generative art. Developers can integrate it into web pages or interactive dashboards where geographic structure is central, and users can pan/zoom to compare different cities or neighborhoods. -
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IoTDB
Apache IoTDB
Apache IoTDB (Database for Internet of Things) is an IoT native database with high performance for data management and analysis, deployable on the edge and the cloud. Due to its light-weight architecture, high performance and rich feature set together with its deep integration with Apache Hadoop, Spark and Flink, Apache IoTDB can meet the requirements of massive data storage, high-speed data ingestion and complex data analysis in the IoT industrial fields. In the scene of factories, there... -
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brms
brms R package for Bayesian generalized multivariate models using Stan
...It allows R users to specify complex Bayesian models using formula syntax similar to lme4 but with far more flexibility (distributions, link functions, hierarchical structure, nonlinear terms, etc.). It supports model diagnostics, posterior predictive checking, model comparison, custom priors, and advanced features such as distributional regression. -
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ProbabilisticCircuits.jl
Probabilistic Circuits from the Juice library
This module provides a Julia implementation of Probabilistic Circuits (PCs), tools to learn structure and parameters of PCs from data, and tools to do tractable exact inference with them. Probabilistic Circuits provides a unifying framework for several family of tractable probabilistic models. PCs are represented as computational graphs that define a joint probability distribution as recursive mixtures (sum units) and factorizations (product units) of simpler distributions (input units). ... -
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Jmol
An interactive viewer for three-dimensional chemical structures.
Over 1,000,000 page views per month. Jmol/JSmol is a molecular viewer for 3D chemical structures that runs in four independent modes: an HTML5-only web application utilizing jQuery, a Java applet, a stand-alone Java program (Jmol.jar), and a "headless" server-side component (JmolData.jar). Jmol can read many file types, including PDB, CIF, SDF, MOL, PyMOL PSE files, and Spartan files, as well as output from Gaussian, GAMESS, MOPAC, VASP, CRYSTAL, CASTEP, QuantumEspresso, VMD, and many other... -
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libsombrero
Astronomical object/structure detection from 1D and 2D data sets.
Sombrero is a fast wavelet image processing and object detection C library for astronomical images. Sombrero is named after the "Mexican Hat" shape of the wavelet masks used in image convolution and is released under the GNU LGPL library. -
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Fondant
Production-ready data processing made easy and shareable
Fondant is a modular, pipeline-based framework designed to simplify the preparation of large-scale datasets for training machine learning models, especially foundation models. It offers an end-to-end system for ingesting raw data, applying transformations, filtering, and formatting outputs—all while remaining scalable and traceable. Fondant is designed with reproducibility in mind and supports containerized steps using Docker, making it easy to share and reuse data processing components.... -
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FlexiList.
FlexiList is a Java data structure that combines the benefits of array
FlexiList is a Java data structure that combines the benefits of arrays and linked lists. Like an array, it allows for efficient access to elements by index. Like a linked list, it allows for efficient insertion and deletion of elements at any position in the list. Benefits Over Arrays and ArrayList ->Efficient Insertion and Deletion: FlexiList can insert or delete nodes at any position in the list in O(1) time, whereas arrays require shifting all elements after the insertion or deletion point. ...
