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pydna
Clone with Python! Data structures for double stranded DNA
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning. Planning genetic constructs with many parts and assembly steps, such as recombinant metabolic pathways, are often difficult to properly document as is evident from the poor state of documentation in the scientific literature. The pydna python package provide a human-readable formal description of cloning and genetic assembly strategies in Python which... -
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SciMLBase.jl
The Base interface of the SciML ecosystem
SciMLBase.jl is the core interface definition of the SciML ecosystem. It is a low-dependency library made to be depended on by the downstream libraries to supply the common interface and allow for the interexchange of mathematical problems. The SciML common interface ties together the numerical solvers of the Julia package ecosystem into a single unified interface. It is designed for maximal efficiency and parallelism, while incorporating essential features for large-scale scientific machine... -
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Recap
Recap tracks and transform schemas across your whole application
Recap is a schema language and multi-language toolkit to track and transform schemas across your whole application. Your data passes through web services, databases, message brokers, and object stores. Recap describes these schemas in a single language, regardless of which system your data passes through. Recap schemas can be defined in YAML, TOML, JSON, XML, or any other compatible language. -
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Ethereum ETL
Python scripts for ETL (extract, transform and load) jobs for Ethereum
Python scripts for ETL (extract, transform and load) jobs for Ethereum blocks, transactions, ERC20 / ERC721 tokens, transfers, receipts, logs, contracts, internal transactions. Data is available in Google BigQuery. Ethereum ETL lets you convert blockchain data into convenient formats like CSVs and relational databases. -
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Genie
Distributed Big Data Orchestration Service
Genie is a completely open source distributed job orchestration engine developed by Netflix. Genie provides REST-ful APIs to run a variety of big data jobs like Hadoop, Pig, Hive, Spark, Presto, Sqoop and more. It also provides APIs for managing the metadata of many distributed processing clusters and the commands and applications which run on them. -
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Alluxio
Open Source Data Orchestration for the Cloud
Alluxio is the world’s first open source data orchestration technology for analytics and AI for the cloud. It bridges the gap between computation frameworks and storage systems, bringing data from the storage tier closer to the data driven applications. This enables applications to connect to numerous storage systems through a common interface. It makes data local, more accessible and as elastic as compute. -
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Logstash
Centralize, transform and stash your data
Logstash is a server-side data processing pipeline that dynamically ingests data from numerous sources, transforms it, and ships it to your favorite “stash” regardless of format or complexity. It supports and ingests data of all shapes, sizes and sources, dynamically transforms and prepares this data, and transports it to the output of your choice. Logstash is extensible, with over 200 plugins available to let you create and configure your pipeline how you choose. -
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ChaosTools.jl
Tools for the exploration of chaos and nonlinear dynamics
A Julia module that offers various tools for analyzing nonlinear dynamics and chaotic behavior. It can be used as a standalone package, or as part of DynamicalSystems.jl. All further information is provided in the documentation, which you can either find online or build locally by running the docs/make.jl file. ChaosTools.jl is the jack-of-all-trades package of the DynamicalSystems.jl library: methods that are not extensive enough to be a standalone package are added here. You should see the... -
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Interpolations.jl
Fast, continuous interpolation of discrete datasets in Julia
This package implements a variety of interpolation schemes for the Julia language. It has the goals of ease of use, broad algorithmic support, and exceptional performance. Currently, this package supports B-splines and irregular grids. The API has been designed with the intent to support more options. Initial support for Lanczos interpolation was recently added. Pull requests are more than welcome! It should be noted that the API may continue to evolve over time. -
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Unitful.jl
Physical quantities with arbitrary units
Unitful is a Julia package for physical units. We want to support not only SI units but also any other unit system. We also want to minimize or in some cases eliminate the run-time penalty of units. There should be facilities for dimensional analysis. All of this should integrate easily with the usual mathematical operations and collections that are found in Julia base. -
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DataChain
AI-data warehouse to enrich, transform and analyze unstructured data
Datachain enables multimodal API calls and local AI inferences to run in parallel over many samples as chained operations. The resulting datasets can be saved, versioned, and sent directly to PyTorch and TensorFlow for training. Datachain can persist features of Python objects returned by AI models, and enables vectorized analytical operations over them. The typical use cases are data curation, LLM analytics and validation, image segmentation, pose detection, and GenAI alignment. Datachain... -
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Vulkan.jl
Using Vulkan from Julia
Vulkan.jl is a lightweight wrapper around the Vulkan graphics and compute library. It exposes abstractions over the underlying C interface, primarily geared toward developers looking for a more natural way to work with Vulkan with minimal overhead. It builds upon the core API provided by VulkanCore.jl. Because Vulkan is originally a C specification, interfacing with it requires some knowledge before correctly being used from Julia. This package acts as an abstraction layer, so that you don't... -
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DynamicalSystems.jl
Award winning software library for nonlinear dynamics timeseries
DynamicalSystems.jl is an award-winning Julia software library for nonlinear dynamics and nonlinear time series analysis. To install DynamicalSystems.jl, run import Pkg; Pkg.add("DynamicalSystems"). To learn how to use it and see its contents visit the documentation, which you can either find online or build locally by running the docs/make.jl file. DynamicalSystems.jl is part of JuliaDynamics, an organization dedicated to creating high-quality scientific software. All implemented algorithms... -
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POCO
Cross-platform C++ libraries for building network applications
...Whether building automation systems, industrial automation, IoT platforms, air traffic management systems, enterprise IT application and infrastructure management, security and network analytics, automotive infotainment and telematics, financial or healthcare, C++ developers have been trusting the POCO C++ Libraries for 15+ years and deployed it in millions of devices. Create software for connected embedded devices running Linux, Windows Embedded or QNX. Create cross-platform backends in C++ for iOS and Android applications and combine it with a native or HTML5-based user interface. Create software for IoT devices that talk to cloud backends over HTTP REST APIs. See macchina.io for an IoT platform built with POCO. -
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RCall.jl
Call R from Julia
R is a language for statistical computing and graphics that has been around for a couple of decades and it has one of the most impressive collections of scientific and statistical packages of any environment. Recently, the Julia language has become an attractive alternative because it provides the remarkable performance of a low-level language without sacrificing the readability and ease of use of high-level languages. However, Julia still lacks the depth and scale of the R package... -
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Bayesian Statistics
This repository holds slides and code for a full Bayesian statistics
This repository holds slides and code for a full Bayesian statistics graduate course. Bayesian statistics is an approach to inferential statistics based on Bayes' theorem, where available knowledge about parameters in a statistical model is updated with the information in observed data. The background knowledge is expressed as a prior distribution and combined with observational data in the form of a likelihood function to determine the posterior distribution. The posterior can also be used... -
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Kestra
Kestra is an infinitely scalable orchestration and scheduling platform
Build reliable workflows, blazingly fast, deploy in just a few clicks. Kestra is an open-source, event-driven orchestrator that simplifies data operations and improves collaboration between engineers and business users. By bringing Infrastructure as Code best practices to data pipelines, Kestra allows you to build reliable workflows and manage them with confidence. Thanks to the declarative YAML interface for defining orchestration logic, everyone who benefits from analytics can participate... -
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Nuclio
High-Performance Serverless event and data processing platform
Nuclio is an open source and managed serverless platform used to minimize development and maintenance overhead and automate the deployment of data-science-based applications. Real-time performance running up to 400,000 function invocations per second. Portable across low laptops, edge, on-prem and multi-cloud deployments. The first serverless platform supporting GPUs for optimized utilization and sharing. Automated deployment to production in a few clicks from Jupyter notebook. Deploy one of... -
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XState
State machines and statecharts for the modern web
JavaScript and TypeScript finite state machines and statecharts for the modern web. Statecharts are a formalism for modeling stateful, reactive systems. This is useful for declaratively describing the behavior of your application, from the individual components to the overall application logic. XState is a library for creating, interpreting, and executing finite state machines and statecharts, as well as managing invocations of those machines as actors. The following fundamental computer... -
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Koito
Koito is a modern, themeable scrobbler
Koito is a lightweight, self-hostable collaborative knowledge base and note-taking platform designed to help teams and individuals capture, organize, and link ideas with the reliability of a local or private server rather than relying on managed SaaS tools. It combines concepts from wikis, Zettelkasten systems, and modern note apps by letting you create interconnected notes, bidirectional links, and structured collections that mirror how knowledge naturally grows. The interface supports... -
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timelinize
Store your data from all your accounts and devices
timelinize is an open-source tool for creating rich, shareable timelines from structured data sources (like YAML, CSV, or JSON) that helps users transform static event lists into beautiful, interactive narratives suitable for presentations, documentation, or educational displays. The project emphasizes simplicity and flexibility by letting contributors focus on the data — defining dates, labels, descriptions, links, and media — while timelinize handles rendering, layout, and interactivity in... -
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clusterProfiler
A universal enrichment tool for interpreting omics data
clusterProfiler is an R/Bioconductor package that provides a unified workflow for functional enrichment analysis to interpret high-throughput omics results. It supports both over-representation analysis and gene set enrichment analysis, letting you work with unranked gene lists or ranked statistics from differential pipelines. The package connects to multiple knowledge bases—such as Gene Ontology, KEGG, Reactome, Disease Ontology, MeSH and others—through a consistent interface so you can... -
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Discord.SortedSet
Elixir SortedSet backed by a Rust-based NIF
SortedSet NIF is a performant and reliable sorted set data structure for Elixir, implemented in Rust using the Rustler crate to take advantage of native performance while maintaining seamless integration with the BEAM ecosystem. It provides ordering and uniqueness guarantees, with all terms stored according to Elixir’s built-in sorting rules. Internally, it uses a vector of vectors layout rather than a single vector to minimize costly reallocations, allowing efficient bucket pointer copying... -
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GenStage
Producer and consumer actors with back-pressure for Elixir
GenStage is a specification and set of behaviours for building demand-driven data pipelines on the BEAM. It formalizes the roles of producers, consumers, and producer-consumers, using back-pressure so that fast producers don’t overwhelm downstream stages. Developers implement callbacks like handle_demand and handle_events to control how items are emitted, transformed, and consumed across asynchronous boundaries. Because stages are OTP processes, you gain fault tolerance, supervised restarts,... -
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Pathway
Python ETL framework for stream processing, real-time analytics, LLM
Pathway is an open-source framework designed for building real-time data applications using reactive and declarative paradigms. It enables seamless integration of live data streams and structured data into analytical pipelines with minimal latency. Pathway is especially well-suited for scenarios like financial analytics, IoT, fraud detection, and logistics, where high-velocity and continuously changing data is the norm. Unlike traditional batch processing frameworks, Pathway continuously...
