Search Results for "algorithms" - Page 4
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Showing 209 open source projects for "algorithms"
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NOVA
Analysis and visualization of complexome profiling data.
NOVA is a program designed to analysis complexome profiling data (Heide et al., 2012). A graphical user interface (GUI) provides various visualization tools, such as heat maps and 2D plots. Several hierarchical clustering algorithms (e.g., single linkage, average linkage, Wards linkage), different distance measures (e.g., Euclidean distance, Manhattan distance, Pearson distance), and various normalization techniques are implemented. Many additional functions like zooming, searching for proteins, image export, and automatic file format recognition support intuitive handling for biologists. ... -
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Pigale is a graph editor and a C++ algorithm library essentially concerned with planar graphs. This software, particularly intended for graph theoretical research, includes new algorithms based on our recent theoretical researches.
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Alevin2
Tool for the evaluation of ALgorithms for Embedding VIrtual Networks
ALgorithms for Embedding VIrtual Networks Software to evaluate Virtual Network Embedding Algorithms. -
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Central Proteomics Facilities Pipeline
A data analysis pipeline for shotgun mass-spectrometry proteomics.
.... == Project Status - Updated January 3rd 2019 == CPFP has not been actively developed since 2014, when I left the proteomics group at UTSW. To access up-to-date algorithms for the analysis of proteomics data, other tools would now be preferred. However: * Limited fixes have been made on the main master branch by Phil Charles at the University of Oxford. * As of 2019, limited maintenance is being carried out by myself (now in the BioHPC high performance computing group at UTSW), to allow CPFP to install and run on RHEL 7 / CentOS 7, with updated TPP 5.1.0 and search tools. ... -
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SPar: Stream Parallelism in Multi-Cores
An Embedded C++ Domain-Specific Language
SPar is an internal C++ Domain-Specific Language (DSL) suitable to model and implement classical stream parallel patterns. The DSL uses standard C++ attributes to introduce annotations tagging the notable components of stream parallel applications: stream sources and stream processing stages. Latest version can be downloaded from the SVN using the following command: svn checkout svn://svn.code.sf.net/p/spar-dsl-compiler/svn/ spar -
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This site hosts the source code for C++ version of the Broker for SBW, NOM module, advanced simulation suite, analysis applications and model editors.
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FractalNow
Fast, advanced, multi-platform fractal generator
...The graphical tool, based on Qt library, allows users to explore fractals intuitively and generate pictures. Both tools are entirely multi-threaded and implement advanced algorithms and heuristics that make computation very fast compared to most existing free fractal generators. -
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DeepLearningProject
An in-depth machine learning tutorial
...The dataset is not one of the standard sets like MNIST or CIFAR, you will make you very own dataset. Then you will go through a couple conventional machine learning algorithms, before finally getting to deep learning! In the fall of 2016, I was a Teaching Fellow (Harvard's version of TA) for the graduate class on "Advanced Topics in Data Science (CS209/109)" at Harvard University. I was in charge of designing the class project given to the students, and this tutorial has been built on top of the project I designed for the class. -
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Illustrated Algorithms
Interactive algorithm visualizations
Inspired by Grokking Algorithms and python-execution-trace, this project aims to reveal the mechanics behind algorithms via interactive visualizations of their execution. Visual representations of variables and operations augment the control flow, alongside actual source code. You can fast forward and rewind the execution to closely observe how an algorithm works. -
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vizceral
WebGL visualization for displaying animated traffic graphs
vizceral is a component for displaying traffic data on a webgl canvas. If a graph of nodes and edges with data about traffic volume is provided, it will render a traffic graph animating the connection volume between nodes. This component can take multiple traffic graphs and will generate a 'global' graph showing all incoming traffic into each of the 'regions', with support for cross-region traffic. There are three levels of information, global, regional, and service-level, with clicking or... -
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Neuro
The Neuro crypto currency
...Neuro is a scientific-technical project uniting scientists, engineers and programmers inspired by the idea to build something big, kind and bright. From the first stages of work, we will be engaged in the development of new architectures and algorithms of neural networks. Someday we will undoubtedly enter the annual ImageNet Challenge contest to compete with such giants as GoogLeNet Inception and Microsoft ResNet. At further stages of the work, we adapt the neural networks to calculate molecular interactions in protein environments. Our system will help to look for new types of drugs for cancer, Alzheimer's and other serious problems of modern medicine. ... -
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OpenANN
Basic Artificial Neural Network
OpenANN is a basic artificial neural network toolset. It is not being actively maintained. For performance neural networking, consider an alternative (such as https://sourceforge.net/projects/openann-project or https://www.tensorflow.org) -
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ipytracer
Algorithm Visualizer for IPython/Jupyter Notebook
Algorithm Visualizer for IPython/Jupyter Notebook. If you use the display(TracerObject) code from where you want to see, you can use it without any special modification. -
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TESTIMAGES
Testing images for scientific purposes
...The archive includes more than 2 million images originally acquired and divided in three different categories: SAMPLING and SAMPLING_PATTERNS (aimed at testing resampling algorithms), COLOR (aimed at testing color rendering on different displays) and PATTERNS (aimed at testing the rendering of standard geometrical patterns). Please cite the following papers when using any image in this archive: * ASUNI N, GIACHETTI A, "TESTIMAGES: A Large Data Archive For Display and Algorithm Testing", Journal of Graphics Tools, Volume 17, Issue 4, 2015, pages 113-125, DOI:10.1080/2165347X.2015.1024298 * ASUNI N, GIACHETTI A, "TESTIMAGES: a large-scale archive for testing visual devices and basic image processing algorithms", STAG - Smart Tools & Apps for Graphics Conference, 2014. -
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ngx-datatable
A feature-rich yet lightweight data-table crafted for Angular
...It was built for modern browsers using TypeScript, CSS3 and HTML5 and Angular 8.0.0. This is the sister project of the angular-data-table that is designed for Angular 1.x. Intelligent Column Width Algorithms (Force-fill & Flex-grow). Fixed AND Fluid height. Left and Right Column Pinning. Row Detail View. Decoupled theme'ing with included Google Material theme. Light codebase / No external dependencies. AoT Compilation Support. Universal Support. Cell & Row Selection. -
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QuickRNASeq
A pipeline for large scale RNA-seq data analysis
We have implemented QuickRNASeq, an open-source based pipeline for large scale RNA-seq data analysis. QuickRNASeq takes advantage of parallel computing resources, a careful selection of previously published algorithms for RNA-seq read mapping, counting and quality control, and a three-stage strategy to build a fully automated workflow. We also implemented built-in functionalities to detect sample swapping or mislabeling in large-scale RNA-seq studies. Our pipeline significantly lifts large-scale RNA-seq data analysis to the next level of automation and visualization. ... -
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An open source workbench for chemo- and bioinformatics built on the Eclipse Rich Client Platform (RCP).
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A Matlab toolbox for geostatistical modelling, prediction and simulation. It contains native matlab algorithms, and interfaces to SGeMS, GSTAT and VISIM.
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iCubing
Several OLAP algorithms, data structures and HPC OLAP versions
OLAP technology is very useful for decision makers and data mining tools with BIG data. In this direction, we implement iCubing project with several multidimensional data cube approaches for cube indexing, querying, updating and mining. There are also several cube types, i.e. alphanumeric cubes, text cubes with unstructured data and geo cube with geo types, dimensions, measures and hierarchies, so the OLAP area continues a hard challenge after more than 20 years of the seminal paper of Jim... -
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FalansterCity3D
3D urban environment renderer : browser-app ; as well as a GTA clone
...And also produce spin-offs like something similar, but written in C++, and featuring nice, textured OpenGL graphics, and even lower system requirements ; and even more... . Brought to You by Simon (alias ''the Nerd of Algorithms") If You thing You think You may become a sponsor for it's dev, let me know. -
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Open Cezeri Library
Effective Linear Algebra and Computer Vision Library with JAVA
...Currently, it holds following main concepts 1- Vision: It can access web cams, imaging source industrial cameras for manuel settings and advanced issues. Studies on accesing Leapmotion and Kinect is still under-development. 2- Machine learning: It uses Weka Software tool and some personel coded ML algorithms 3- CMatrix: Special matrix library called as CMatrix meaning Cezeri Maztrix Class. Actually it is regarded as the core of the OCL. CMatrix supports fluent interface and method chaining. -
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New Terrain and 3D Map System
a very lightweight advanced terrain-rendering and 3D map rendering sys
A very lightweight advanced terrain-rendering and 3D map rendering system. Minimal dependencies: OpenGL, SDL. It's distrib in 2-3 separate modules: 1. the C++ implementation of the terrain- and/or surface- rendering Algorithms I have developed: both a multithread and a non-multithread variant is relaeased. 2. Seme as at point 1. , but with a road-network rendering and collision-detection module I wrote before. It also adds some trees at the top of the terrain. (multitread vesion not released yet) 3. Seme as point 2.. Multithread terrain-rendering, roads on it, and vehicles to go around. ... -
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ankus
Data Mining and Machine Learning Algorithms based on MapReduce
[The feature of ankus] * ankus is a 'web-based big data mining project and tool'. - MapReduce-based data mining/machine learning algorithms library - Hadoop-based distributed bigdata system - offering a web-based GUI for easy use [The ankus project & License] * The ankus project consists of three as an open source. * ankus has Dual licensed under the community and commercial licenses. * community license is following GPLv3 - Some algorithms in Core Project do not under the OSS License [Demonstration Site] http://www.openankus.org:18080 [Official website & E-mail] www.openankus.org ankus@openankus.org [ankus video list] http://bit.ly/ankus_video [community] http://www.facebook.com/groups/openankus (Korean Groups) http://www.facebook.com/openankus (English Groups) http://bit.ly/ankus_forum (Google groups user forum) -
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SPIW - Scanning Probe Image Wizard
Scanning Probe Image Wizard - MATLAB Toolbox
...A related open-source project SPIEPy (https://pypi.python.org/pypi/SPIEPy/) is developing a python library to for automated SPM imaged enhancement. SPIEPy brings many SPIW algorithms to the Python user. -
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TreeLayout
Efficient and customizable TreeLayout Algorithm in Java, for NetBeans
Efficiently create compact, highly customizable tree layouts - Based on Walker's algorithm with enhancements suggested by Buchheim, Jünger, and Leipert the software builds tree layouts in linear time. I.e. even trees with many nodes are built fast. Downloads are available at https://sourceforge.net/projects/treelayout/files/. For detailed documentation look at the TreeLayout web site http://treelayout.sourceforge.net/. Development for TreeLayout has moved to...
