Showing 582 open source projects for "using"

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  • 1
    Arcadia is a light-weight, cross-platform, C++ desktop application designed for visualizing biological networks such as metabolic pathways.
    Downloads: 0 This Week
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  • 2
    Grid3D Toolbox

    Grid3D Toolbox

    3D grid toolbox for analysis of molecular simulations

    ...Currently, the tools only work with the simulation trajectories generated by the GROMACS simulation package (http://www.gromacs.org/). The generated density maps are saved in the Grid3D native .g3d format and can be visualized using a third party data visualization software. A converter from the .g3d format to .vti, an XML based format of the VTK library is provided with the "Grid3D Toolbox", so that the generated density maps can be visualized using the ParaView data analysis and visualization software (http://www.paraview.org). For more details read the upcoming publication in Faraday Discussions: FD169: Density based visualization for molecular simulation.
    Downloads: 0 This Week
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  • 3

    di-history-join-plugin

    Plugin for Pentaho Data Integration used to supply a method to join tw

    This plugin supply a method to join two tables using the date-from and date-to history. It use the two dates that indicate the life of the record and join using a query (like the database join plugin) to resolve the record's story of the two entities.
    Downloads: 0 This Week
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  • 4

    BinaryView

    Show binary data

    BinaryView is able to show 2d binary data either as xy-plot or using a simple fragment shader. Standard shaders like simple color mapping or a relief shading for digital elevation data already exist, but you can also write your own shader. As an example, the screenshots show Mars MOLA topographic data taken from http://pds-geosciences.wustl.edu/missions/mgs/megdr.html
    Downloads: 0 This Week
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  • Atera all-in-one platform IT management software with AI agents Icon
    Atera all-in-one platform IT management software with AI agents

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  • 5

    deshang

    Software to support deshang research

    Deshang research project mainly focus on collecting students' behaviors and using big data technologies to analyze the factors which might make effects on behavior changing and to build strategies set of parents and teacher guiding. This SF project aims to provide interface and backend analysis functionalities for project Deshang. The softwares used are WAMP (Window Apache + MySQL + PHP) with phpMyAdmin (web base MySQL admin console) included, WordPress (3.8.1 chinese version), Sphinx as search engine and libMMSeg chinese directionary for Sphinx.
    Downloads: 0 This Week
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  • 6

    GnuplotIpp

    Gnuplot C/C++ interface (the real extension of gnuplot_i)

    ...Gnuplot_ipp provides the same light interface as gnuplot_i but makes it compatible with C++ as well. Finally, an extra C++ wrapper that takes care of opening and closing handles and makes code more organized is provided. All of this was performed using the C/C++'s maxima: "if you don't use it you don't pay for it". Both interfaces are available in C++, and in C you are given the original gnuplot_i interface.
    Downloads: 0 This Week
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  • 7
    A command-line interface for the OpenGroupware Coils collaboration platform and OIE workflow solution. Using snurtle you can manage and examine the content of your Coils server as well as manage workflows all from a convenient command line interface
    Downloads: 0 This Week
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  • 8

    Ondex Web

    Web-based visualisation of networks using Java

    Ondex Web is a new web-based implementation of the network visualization and exploration tools from the Ondex data integration platform. New features such as context-sensitive menus and annotation tools provide users with intuitive ways to explore and manipulate the appearance of heterogeneous biological networks. Ondex Web is open source, written in Java and can be easily embedded into Web sites as an applet. Ondex Web supports loading data from a variety of network formats, such as XGMML,...
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  • 9
    Flatland VR

    Flatland VR

    Flatland is the virtual environment for Virtual Reality.

    Flatland is the virtual environment developed to perform these investigations. Using Flatland as the base environment scientists can visualize and explore both their data and the computations that manipulate that data. Imagine, if you will, a scientist able to examine the real-time results of a simulation and, when he notices an anomally he would like to investigate, he turns to the program running the simulation and examines the code, possibly changing it on the fly.
    Downloads: 0 This Week
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  • 10

    SVG_plot

    Plot data in SVG format using C++ library

    The SVG_plot C++ library allows, with a few lines of C++ code, to add plotting of data, held in STL containers like vector and map, output as SVG files that can be viewed by all modern browsers. 1D, 2D and Boxplots can be produced, and there are a myriad of options to control appearance. The plots are very high quality and can be expanded without loss of quality (no pixelation!) but are tiny, (compared for a Microsoft Excel plot, for example) and are easily compressible, making them...
    Downloads: 0 This Week
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  • 11

    Big Sack

    Big Sack: A lightweight Java Key/Value store with undo and disk cache.

    ...It has the convenience of Java SDK TreeMap and TreeSet classes and is used the same easy way, but it includes rollback through undo logging to checkpoint data so it does not wind up in an unknown state regardless of failures. Data storage in the exabyte range is possible using filesystem and/or memory-mapped IO. Three levels of configurable write-through caching at different granularities ensure performance.
    Downloads: 0 This Week
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  • 12
    Nuclei

    Nuclei

    Feature rich GUI for nuclear decay schemes

    Nuclei is a software tool for the displaying of nuclear decay schemes and estimated energy spectra, the calculation of angular γ emission anisotropies, and the automated search for appropriate decay cascade properties. It uses the Evaluated Nuclear Structure Data Files (ENSDF). A description of Nuclei's functionality and results obtained using its search method was published in Nuclear Instruments and Methods in Physics Research, Section A: M. Nagl, et al., NIM A 726 (2013), 17-30 [doi:10.1016/j.nima.2013.05.045] ------------------------- © 2012-2013, Matthias Nagl, II. Physikalisches Institut, Georg-August-Universität Göttingen http://physik2.uni-goettingen.de/research/2_hofs -------------------------
    Downloads: 4 This Week
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  • 13
    Census2
    Census is a comprehensive cross-platform project manager and integration hub for NONMEM, the gold standard tool for model-based pharmacometric data analysis.
    Downloads: 0 This Week
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  • 14

    Runge

    Runge is an Interactive Solver for Systems of Differential Equations

    ...It uses Runge Rule to adjust step length to satisfy required precision on each step. It's effective. When it needs to compute derivatives (Jacobian matrix, for example) it does that analytically, i.e. without using numerical methods. It's portable. It works on Windows and Linux 32 and 64 bit and Mac OS X 64 bit. It's open. It allows you to implement and embed your own algorithms (aka "solvers"). It's easy to use. It allows to export results to MS Excel and MATLAB. It's multilingual. It currently supports Englis and Russian languages. ...
    Downloads: 1 This Week
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  • 15
    compare-results

    compare-results

    Program comparing Simulation Results for the SBML TestSuite

    Compare SBML Test Suite Results =============================== The [SBML Testsuite](http://sbml.org/Facilities/Online_SBML_Test_Suite) allows developers of ODE based simulators to test their implementation against a large number of test cases that test a wide aspect of the [SBML Specifications](http://sbml.org/Documents/Specifications). While implementing my simulator [RoadRunner](http://roadrunner.sf.net) I wanted to be able to compare it using a wider range of parameters: - filter for new tests - filter for tests with specific tags - mark elements that I know I did not implement
    Downloads: 0 This Week
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  • 16

    Xross Tab / QScript

    Market Research Data Processing Suite

    XTCC/Qscript revolves around two concepts: 1) Data collection : Qscript 2) Data analysis : XTCC Qscript enables Market Research companies to securely collect data using online and offline mediums such as web, tablets/mobile. Different products include: 1) Pen and Paper Survey Management Qscript enables faster and easier keyboard entry with real time logic and validation. It generates SPSS and IBM Quantum compatible data tabulation programs leading to significant time savings of up to 80%. This is already being used by various companies in Market Research industry. 2) Tablet/Web enabled Survey Management Companies can launch the same survey, online and over Tablet/mobile. ...
    Downloads: 0 This Week
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  • 17

    ViSEN

    Visualization tool for statistical epistasis networks

    The objective of this project is to provide a graphical visualization for statistical epistasis.  Pairwise and three-way epistatic interactions are measured using information gain and are represented using networks.
    Downloads: 0 This Week
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  • 18

    PVideo

    Compare Videos Side By Side

    Compare several video in separate view ports, using synchronized playback. This project is licensed under the GPLv3.0
    Downloads: 0 This Week
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  • 19
    TronTool

    TronTool

    Tuning of java neuroph.org neural nets.

    By using a neural net from neuroph.org with the programmlanguage Java, you can change the net by this software. Easy watch it on the screen and move the values up or down. More or less value at the output neurons. Saving, Loading from different .nnet`s. Adding comments. Changing the visible output neuron Setting wished input neurons to get visible.
    Downloads: 1 This Week
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  • 20

    CollectD-CSV Plotter

    Web interface for visualizing CSV data from CollectD monitoring system

    CollectD-CSV Plotter is a web interface for fetching and visualizing data that is saved in CollectD CSV format. An HTML form is used for defining the time interval and choosing the wanted measurements. The plotter is actually a front-end for collectd-csv module (http://pypi.python.org/pypi/collectd-csv/), which it uses for fetching the data. Technologies CollectD-CSV Plotter uses include CGI/Python, HTML5/JavaScript, jQuery, jQuery-UI and Gnuplot.
    Downloads: 0 This Week
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  • 21
    GPU Edge Detector

    GPU Edge Detector

    GPU Interactive Program For Edge detection

    This is a standalone, all in one Edge Detector that is mainly running on GPU using the CUDA technology. Each algorithm also has an OpenCV counterpart which is the closest one in terms of speed. This project is partly based on the Sobel Filter sample available as part of the CUDA SDK. This project also partly uses the OpenCV library to load different types of image. This program includes: Prewitt filter, Roberts Cross, Canny edge detector and finally Sobel filter with the ability to modify some variables such as sigma in Canny and see the result in real-time. ...
    Downloads: 1 This Week
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  • 22

    mendelFix

    Correction of SNP Mendelian errors in trio data

    ...The program takes 12-recoded PLINK PED and MAP files as input, and calculates a series of summary statistics for Mendelian errors, sets as missing offspring genotypes that present Mendelian inconsistencies, and implements a simplistic procedure to infer missing genotypes using parent information. The program can be easily incorporated in any pipeline for family-based SNP data analysis, and is distributed as free software under the GNU General Public License. Utsunomiya YT, Alonso RV, Carmo AS, Campagnari F, Visintin J, Garcia JF (2013). mendelFix: a Perl script for checking Mendelian errors in high density SNP data of trio designs. arXiv:1306.2243. ...
    Downloads: 0 This Week
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  • 23

    WaveSorter

    A powerful, versatile tool for offilne spike analysis and sorting

    WaveSorter emphasizes dynamic visualization and versatility. Slider controls let the user select any coefficient or sample from any of several transforms, which can then be plotted to either axis of a 2D histogram (scatterplot). Within the waveform space, cursor-based controls let the user select subregions of the waveform space or individual waveforms to view. The user may cluster waveforms manually or via one of several popular clustering programs. The classification along with waveform...
    Downloads: 0 This Week
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  • 24
    Bayesian Network tools in Java (BNJ) is an open-source suite of software tools for research and development using graphical models of probability. It is published by the Kansas State University Laboratory for Knowledge Discovery in Databases (KDD).
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  • 25
    This plugin allow to visualize several e.g. gene expression values simultanously using pie charts. * Please cite http://www.biomedcentral.com/1752-0509/4/164 *
    Downloads: 1 This Week
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