Search Results for "research"
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Showing 73 open source projects for "research"
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Chromatone
Chromatone is a digital garden of visual music theory
Cards and short overviews on the physics and physiology of vision and hearing and their intersection at visual music research, exploration, practice, and self-expression. Useful tools to have in the pocket like a pack of interactive cards to learn and use in everyday music practice. These are open source web experiments with different aspects of sound and color. Chromatone is an open source research and design project to explore, develop and implement the scientific way of visual music education, communication and performance. ... -
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Jmol
An interactive viewer for three-dimensional chemical structures.
Over 1,000,000 page views per month. Jmol/JSmol is a molecular viewer for 3D chemical structures that runs in four independent modes: an HTML5-only web application utilizing jQuery, a Java applet, a stand-alone Java program (Jmol.jar), and a "headless" server-side component (JmolData.jar). Jmol can read many file types, including PDB, CIF, SDF, MOL, PyMOL PSE files, and Spartan files, as well as output from Gaussian, GAMESS, MOPAC, VASP, CRYSTAL, CASTEP, QuantumEspresso, VMD, and many other... -
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QUAST
Quality Assessment Tool for Genome Assemblies
...The tool also produces web-based reports condensing all information in one easy-to-navigate file. QUAST and its three follow-up papers (MetaQUAST, Icarus, QUAST-LG) papers were published in Bioinformatics; the last paper (WebQUAST) is out in Nucl Acid Research. -
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MathMod
MathMod is a mathematical modeling software
MathMod is a portable interactive plotting and graphing program for Windows, Linux, MacOSX and many other platforms. MathMod allows to plot 3D mathematical surfaces, described by implicit or parametric equations, and offers a very large database of model samples that can be generated with it. It's Free and Open Source. Change-log for MathMod-13.0 (15/11/2025) 1) Scripts generator to add thickness to iso/parametric surfaces 2) Undo/Redo commands for navigating through previous... -
Build Agents and Models on One PlatformGemini Enterprise Agent Platform is Google Cloud's comprehensive platform for developers to build, scale, govern, and optimize agents and models. Choose from Google's most advanced models and third-party models like Anthropic's Claude Model Family.
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PlateEditor
PlateEditor, a free web application to work with multi-well plates
...It is primarily designed as a tool to help scientists working in the field of biology to simplify and fasten the process of data analysis. It is fully client-side: files are never transferred to the server, ensuring complete security and privacy of research data. It doesn't require any installation. - PlateEditor is available at this address: https://plateeditor.sourceforge.io - The source code is also available on GitHub, visit: https://github.com/vindelorme/PlateEditor More information about the source code and the API are available there (the wiki is still under construction, thanks for your patience!) ... -
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The Huygens Remote Manager is an open-source, efficient, multi-user web-based interface to the Huygens software by Scientific Volume Imaging (http://www.svi.nl/) for parallel batch deconvolutions.
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Rawgraphs app
A web interface to create custom vector-based visualizations
...Microsoft Excel, Apple Numbers, OpenRefine) and vector graphics editors (e.g. Adobe Illustrator, Inkscape, Figma). The project, led and maintained by the DensityDesign Research Lab (Politecnico di Milano) was released publicly in 2013. -
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AlphaPlot
Interactive scientific graphing and data analysis software.
Alpha Plot can generate different types of 2D and 3D plots (such as line, scatter, bar, pie, and surface plots) from data that is either imported from ASCII files, entered by hand, or calculated using formulas. The data is held in spreadsheets which are referred to as tables with column-based data (typically X and Y values for 2D plots) or matrices (for 3D plots). The spreadsheets as well as graphs and note windows are gathered in a project and can be organized using folders. The built-in... -
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Nexplorer is a web-based phylogenetic browser, used to view and edit comparative data, and ideal for creating publication-quality views in which the tips of a tree are aligned with the rows of a character matrix (e.g., a sequence alignment).
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Data Science at the Command Line
Data science at the command line
Command Line by Jeroen Janssens, published by O’Reilly Media in October 2021. Obtain, scrub, explore, and model data with Unix Power Tools. This repository contains the full text, data, and scripts used in the second edition of the book Data Science at the Command Line by Jeroen Janssens. This thoroughly revised guide demonstrates how the flexibility of the command line can help you become a more efficient and productive data scientist. You’ll learn how to combine small yet powerful... -
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istSOS
Free and Open Source Sensor Observation Service Data Management System
istSOS is an OGC SOS server implementation written in Python. istSOS allows for managing and dispatch observations from monitoring sensors according to the Sensor Observation Service standard. The project provides also a Graphical user Interface that allows for easing the daily operations and a RESTful Web api for automatizing administration procedures. istSOS is released under the GPL License, and runs on all major platforms (Windows, Linux, Mac OS X), even though tests were conducted... -
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geoStarsLib - geodetic library
Geodesy based library (geodetic and geocentric functions)
geoStarsLib has functions for dealing with many geodesy-based problems found in positioning, pointing, and surveying situations. It is useful to determine absolute position on the earth, pointing vectors, coordinate transformations, and other functions. -
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CueMol
CueMol - Molecular Visualization Framework
CueMol - Molecular Visualization Framework based on OpenGL, Mozilla XULRunner, and javascript -
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DICOM Image Reader
A minimal Medical application to read and view DICOM (dcm) image file
Dicom Image Reader is opensource medical image viewer built with JavaScript, HTML5, NodeJS and Electron framework. It can load data in DICOM format (single image dcm) and provides standard tools for its manipulation such as contrast, zoom, drag, possibility to draw regions on top of the image and imaging filters such as threshold and sharpening. It is based DWV JavaScript opensource library. =============== Requirements: - Processor: Intel Pentium 4 processor or later that's SSE2... -
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x-ballistics
a browser based ballistics calculator for arrows and bullets
Browser based ballistics calculator for arrows and bullets: http://www.x-ballistics.eu/app/web/ballistics/index -
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Spark Notebook
Interactive and Reactive Data Science using Scala and Spark
...It allows developers, data scientists, and analysts to write, run, and visualize Spark code in cells that support multiple languages such as Scala, Python, and SQL, all within the same notebook. Users can interleave runnable code, rich text markup, visualizations, equations, and results, enabling reproducible research and exploratory data analysis workflows. Because it runs on top of Spark’s distributed engine, it can scale from running locally on a laptop to executing on clusters with large datasets without changing user workflow. The UI is notebook-style with support for incremental execution, error inspection, and stateful session continuity, making it easy to iterate on data transformations and model training tasks. -
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ZENBU is a data integration, data processing, and visualization web system based around three main web interfaces : an expression data enhanced genome browser interface, a secured user system for data upload and secured data sharing, and a data explorer interface to find and manipulate data across the many supported experimental data types and to find shared user configurations ZENBU is built as a web2.0 client/server application with javascript web clients and c++ server infrastructure.
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AXYZ
Newsfeed aggregator
...Furthermore it also provides statistics that can be used to study the production of any producer subject and the impact of the information that published in other sources. The result that has been obtained in the research, allow to create modules capable of compare the relationship between different news or information from different sources, their degree of influence and their detection by the patterns. -
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FalansterCity3D
3D urban environment renderer : browser-app ; as well as a GTA clone
Have You ever wondered what would be like the weirdest Grand Theft Auto clone ever made? Well, we are pretty close with the FalansterCity3D urban environment rendering-engine where You can also drive the cars in the city. And moreover, it's a browser-game, so it runs instantly in any internet-browser. Why not try it directly at the link below? http://nerdofalgorithms.altervista.org/secondary_pages/page_11.php Even on smarthones or whatever, as long as it has a browser and sufficient... -
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Data Science Specialization
Course materials for the Data Science Specialization on Coursera
The Data Science Specialization Courses repository is a collection of materials that support the Johns Hopkins University Data Science Specialization on Coursera. It contains the source code and resources used throughout the specialization’s courses, covering a broad range of data science concepts and techniques. The repository is designed as a shared space for code examples, datasets, and instructional materials, helping learners follow along with lectures and assignments. It spans... -
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Science & Engineering Inventory
Rediscover the Simplicity http://www.atgclabs.com/
...Help us to improve Lab Inventory. We want to hear your feedback! https://www.atgclabs.com/products/li The Lab Inventory System is an innovative, easy to learn full-featured solution for research laboratories. You can quickly and easily upload your existing Excel based inventory and get started in minutes, manage laboratory inventory, place orders and keep track of them in one place. Lab Inventory can provide you with the advanced functionality you require enabling you to regain control of your stuff. Running a laboratory is challenging, and knowing what you have in stock and who has it is extremely important to reduce costs and increase productivity, make things run efficiently. ... -
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Lab Processes
Rediscover the Simplicity http://www.atgclabs.com/
Help us to improve Lab Processes. We want to hear your feedback! Request new Lab Processes feature or module and receive a free Single User version with new feature. https://www.atgclabs.com/products/lp Lab Processes is a comprehensive and straightforward application specially designed for biologists and chemists who need to conduct a wide variety of tests and experiments on animals. Lab Processes requires minimal computing skills. Genetic and physiological data can be entered either... -
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Sample Tracking
Rediscover the Simplicity http://www.atgclabs.com/
...https://www.atgclabs.com/products/fw Freezer Web Access is a user friendly program designed to assist researchers with establishing an efficient system for storing frozen biological samples. FWA can track all of your research, development and process scale-up data in a single data storage platform, providing a organized and time effective means of keeping inventory and tracking samples on a large scale, while integrating sample storage and data storage on one easy-to-use format, minimizing confusion and increasing overall efficiency. With FWA, storage of samples is simple and systematic by entering them into the program according to their physical arrangements we create virtual containers matching these configurations and dimensions. -
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oasis-genomics
Oasis Genomics cancer omics integration portal
OASIS is an application that enables complex analytical queries across somatic mutations; copy number changes (CNV); and gene expression data. OASIS has been built on top of the BIoMart frameworks and has been extended to incorporate unique tools and visualizations to facilitate analysis of complex cancer "Omics" datasets.
