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graphICs is a converter transforming GDS II-data to Asymptote-code
...To create graphic or PDF-files you need to download Asymptote from asymptote.sourceforge.net.
Look at http://sourceforge.net/p/graphicsic/wiki/Usage/ for the Usage.
You can download the actual version of graphICs, an example MAP-file and the Bachelor-Thesis about graphICs on the download page.
OntoViz, an ontology browser is an extension of my undergraduate honors thesis. This helps a user browse ontologies using a variety of graph drawing algorithms. The ontology can be specified using a text file, a local/remote database or a web service.
This software system serves as both a DICOM image viewer as well as a diagramming tool for collaborating notes on the given image sets. This my Computer Science graduate thesis project at Loyola Marymount University.