Showing 705 open source projects for "sector"

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  • 1

    Bamformatics

    Toolkit and GUI for sequencing data analysis

    The Bamformatics project aims to provide a coherent and consistent approach to analysis of high-throughput sequencing data. Its toolkit includes, among others, programs to identify variants and to compute various types genomic tracks. It also provides a graphical user interface to facilitate general bioinformatic workflows. The project wiki contains further details.
    Downloads: 0 This Week
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  • 2
    Open Cezeri Library

    Open Cezeri Library

    Effective Linear Algebra and Computer Vision Library with JAVA

    OCL stands for Open Cezeri Library (yet another linear algebra and matrix library). This library provides rapid coding as matlab ease of use. To learn for library please try to use test examples at OpenCezeriLibrary\test\test. It is originally developed at el-cezeri laboratory of Siirt University, in order to establish generic framework of reusable components and software tools for machine vision, machine learning, AI and robotic applications. Currently, it holds following main concepts 1-...
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  • 3
    XAware Data Integration Project

    XAware Data Integration Project

    Create XML and JSON data services from any data source

    Create services to integrate applications & move data of any type. Build data views across DBMS, SOAP, HTTP/REST, Salesforce, SAP, Microsoft, SharePoint, Text, LDAP, FTP sources to read, write & transfer data. Eclipse designer & run-time engine.
    Downloads: 0 This Week
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  • 4
    IAP.G2P

    IAP.G2P

    IAP - the Integrated Analysis Pipeline

    The Integrated Analysis Platform (IAP) has been designed and developed to support the analysis of large-scale image data sets of different camera systems. It aims in bridging different data domains and in integrating different approaches to data analysis and post-processing.
    Downloads: 3 This Week
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  • 5
    JTexXchart

    JTexXchart

    Java library for drawing 2D charts with LaTeX math support

    Call me a purist, but I was never happy with the graphs produced with existing (free) Java tools. My dream package is lightweight with minimal dependencies, offers clean vector-graphics export and TeX-support for typesetting mathematical elements in axis labels, chart legends etc. This is hard (impossible?) to find and I thus decided to construct my own, mostly from existing code. This project is based on refactored versions of the popular packages 'XChart' (orig. by Tim Molter, © Knowm...
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  • 6

    Informatica DBMetadata

    Java utility that reads the metadata from table(s)

    Dbmetadata is a Java utility that reads the metadata from table(s) in a specified database and creates the Informatica XML to import into the repository. I created this utility when we were migrating to a new platform and needed a quick way to create flatfile and relational sources and targets that matched the DDL of the table. I also needed to use shortcuts. If you use the import table list, it will create one XML file with all of the tables and shortcuts (if a shortcut folder is specified)...
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  • 7

    Lab Processes

    Rediscover the Simplicity http://www.atgclabs.com/

    Help us to improve Lab Processes. We want to hear your feedback! Request new Lab Processes feature or module and receive a free Single User version with new feature. https://www.atgclabs.com/products/lp Lab Processes is a comprehensive and straightforward application specially designed for biologists and chemists who need to conduct a wide variety of tests and experiments on animals. Lab Processes requires minimal computing skills. Genetic and physiological data can be entered either...
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  • 8
    Phanto_maJ

    Phanto_maJ

    build three dimensional structure

    PhantomaJ is a software which aims to help users designing complexe three dimensional structures and building phantom banks. This software, implemented as an ImageJ plug-in, has been designed to be intuitive. PhantomaJ is thus "ready to use" for most users, but advanced users can choose to modify specific parameters such as intersection mode, intensity decrease function or virtual real three dimension. In addition, adding a new "basic form" consiste for advanced users to write two short...
    Downloads: 0 This Week
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  • 9
    Argunet

    Argunet

    argument map editor for analyzing and visualizing complex debates

    Argunet is a client-server software for computer-supported argument visualization (CSAV). Reconstructed debates are visualized as argument maps and can be shared through the Argunet Server.
    Downloads: 6 This Week
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  • 10
    Fiji is an image processing package based on ImageJ.
    Downloads: 0 This Week
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  • 11
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  • 12
    A Tool for Retrieval, Visualization and Analysis of biological Pathways. Import a Gene or Protein Set from any Excel file. Automatically find signaling Pathways from KEGG. Integrate your Data in Seconds with a live interactive Force-directed Layout.
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  • 13

    oasis-genomics

    Oasis Genomics cancer omics integration portal

    OASIS is an application that enables complex analytical queries across somatic mutations; copy number changes (CNV); and gene expression data. OASIS has been built on top of the BIoMart frameworks and has been extended to incorporate unique tools and visualizations to facilitate analysis of complex cancer "Omics" datasets.
    Downloads: 0 This Week
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  • 14
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  • 15

    Informatica Create ctl

    automate Informatica control file creation

    Createinfactl is a Java utility that enables Administrators to fully automate Informatica deployments from the command line by creating thedeployment group control XML file to be used with the pmrep command “deploydeploymentgroup”. Default settings for the control file can be overridden at the command line and works with both static and dynamic deployment groups in the repository. Please review the “Using the Deployment Control File” section in the Informatica Command Reference guide for...
    Downloads: 0 This Week
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  • 16

    Informatica ExecuteWorkflow

    A utility that uses Informatica Operations API

    A Java utility that uses the Informatica Operations API allowing parameter inputs, trapping of suspended workflows and ability to send an email on failure. This utility extends the functionality of the pmcmd startworkflow and starttask command. If you pass in a parameter file and individual parameters on the command line, a temporary parameter file is created that has the values from the parameter file and appends the individual parameters. The e-mail sent is in HTML format using...
    Downloads: 0 This Week
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  • 17
    Universal Java Matrix Package

    Universal Java Matrix Package

    sparse and dense matrix, linear algebra, visualization, big data

    The Universal Java Matrix Package (UJMP) is an open source Java library which provides sparse and dense matrix classes, as well as a large number of calculations for linear algebra such as matrix multiplication or matrix inverse. Operations such as mean, correlation, standard deviation, replacement of missing values or the calculation of mutual information are supported, too. The Universal Java Matrix Package provides various visualization methods, import and export filters for a large...
    Downloads: 1 This Week
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  • 18
    WOLFGANG

    WOLFGANG

    Editor for Petri nets

    Wolfgang is a lightweight tool that allows users to easily create and edit Petri nets and check them against general and workflow specific net properties. Specifically, Wolfgang supports full PNML conform editing functionality of Place-Transition Nets (P/T-Nets) and Colored Petri Nets (CPN) as they are defined in the SEPIA package. Its simple and easy to use interface allows to quickly create Petri nets from scratch, edit them graphically in many ways, store and even export them as PDFs. Use...
    Downloads: 0 This Week
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  • 19

    iSBatch

    Hyearchical Data Processing Plugin for ImageJ

    iSBatch is a Java-based plugin for ImageJ (version 1.49d) or its distribution Fiji. iSBatch is designed for quick evaluation of analysis pipelines and visual exploration of datasets. It is distributed under an open open-source license (GNU General Public License, version 3). The plugin handles the data in a hierarchical fashion based on a source folder containing all data and little guidance provided by the user. The software is designed for rapid exploration of large datasets and...
    Downloads: 0 This Week
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  • 20
    GWT Highcharts
    GWT Highcharts is a freely available open source library that provides an elegant and feature complete approach for including Highcharts and Highstock visualizations within a GWT application using pure Java code. Note: the source code for this project is now being maintained on GitHub here: https://github.com/squinn/gwt-highcharts
    Downloads: 5 This Week
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  • 21
    HyperImage Virtual Research Environment
    The HyperImage platform supports the linking of (audio)-visual objects, texts and mixed-media documents. References between images in total, regions of images, annotations regarding the images, and other media, are achieved by means of hyperlinks.
    Downloads: 2 This Week
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  • 22
    Open Information Integration
    Open Information Integration Tool Suite (Open II) is used by analysts and programmers to accelerate data integration and harmonization across organizations. OpenII has a neutral schema repository for browsing and comparing all sorts of data models. OpenII is built as a Rich Client Platform Application on top of Eclipse 3.x. Developers need to download Eclipse, install the RCP support, the Fatjar plugin and the Delta Pack in one of the 3.x flavors. Release Notes Release Date: Jan...
    Downloads: 0 This Week
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  • 23

    MindRaider

    MindRaider is a personal notebook and outliner.

    MindRaider is a personal notebook and outliner. Where do you keep private remarks like ideas, plans, gift tips and howtos? Loads of documents and remarks spread around the file system? Can you find a remark when you need it? No? Try MindRaider!
    Downloads: 0 This Week
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  • 24
    JBerd

    JBerd

    Java tools for decoding and manipulating BER encoded ASN.1 Files

    A simple Java ASN BER decoder and profiler A tool for easy manipulation of BER encoded files. An "awk" for ASN.1 BER (for Unix people) or maybe a "notepad" for ASN.1 BER (for Windows people). Jberd (Java BER decoder) is a lightweight BER decoder and associated tools for interpreting and processing BER encoded ASN.1 files. The following facilities are provided: • JBerd Profiler. A tool for profiling the contents of BER encoded files • JBerd Flattener. A tool for converting BER...
    Downloads: 0 This Week
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  • 25
    scipion-xmipp

    scipion-xmipp

    Image processing framework to integrate EM software packages.

    Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM). It integrates several software packages and presents an unified interface for both biologists and developers. Scipion allows to execute workflows combining different software tools, while taking care of formats and conversions. Additionally, all steps are tracked and can be reproduced later on. Xmipp is a well-known package in the EM image processing. It is integrated...
    Downloads: 0 This Week
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