Search Results for "data visualization, research" - Page 5
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Showing 901 open source projects for "data visualization, research"
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Jamberoo (former JMolEditor) is a library of algorithms for structural Computational Chemistry implemented in the Java programming language. The Jamberoo classes can be integrated into other Java applications.
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A spring-based 3D graph layout tool written in Java. Rendering is performed in OpenGL via the JOGL library.
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EntOpt Layout
Relative entropy optimization network layout plugin
The goal of this project is to implement a graph layout / network visualization algorithm as a Java plugin for Cytoscape (http://cytoscape.org/), using a recently published relative entropy optimization based method, called Unified Data Representation (Kovács IA et al. Sci Rep. 2015). If you are using the plugin, please cite: Ágg B, Császár A, Szalay-Bekő M, Veres DV, Mizsei R, Ferdinandy P, Csermely P and Kovács IA (2019) The EntOptLayout Cytoscape plug-in for the efficient visualization of major protein complexes in protein-protein interaction and signalling networks, Bioinformatics 35(21):4490-4492 https://academic.oup.com/bioinformatics/article/35/21/4490/5475596 Our detailed Tutorial on the use of the plugin: https://suopte.com/entopt_2_1_tutorial_20200518.pdf A video about the version 2.1: http://suopte.com/entopt_2_1_tutorial_video.mp4 Don't hesitate to send any questions, comments or bug reports also to agg.bence {at} med.semmelweis-univ.hu. -
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MusicDNA
Experience your favorite music in a unique way
MusicDNA is a music player unlike any other. It is an Android music player that renders beautiful DNA (visualization) of the currently playing music. It does this through the use of the Visualizer Class, and is inspired by paullewis's music-dna. It uses the FFT Data supplied by the Visualizer class of Android , calculating the Amplitude at that exact moment and using this to plot the DNA. MusicDNA fuses the functionality of traditional music players with stunning visualizations. ... -
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DSTK - DataScience ToolKit
DSTK - DataScience ToolKit for All of Us
DSTK - DataScience ToolKit is an opensource free software for statistical analysis, data visualization, text analysis, and predictive analytics. Newer version and smaller file size can be found at: https://sourceforge.net/projects/dstk3/ It is designed to be straight forward and easy to use, and familar to SPSS user. While JASP offers more statistical features, DSTK tends to be a broad solution workbench, including text analysis and predictive analytics features. -
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MOIRAI
Simple Scientific Workflow System for CAGE Analysis
Cap analysis of gene expression (CAGE) is a sequencing based technology to capture the 5’ ends of RNAs in a biological sample. After mapping, a CAGE peak on the genome indicates the position of an active transcriptional start site (TSS) and the number of reads correspond to its expression level. CAGE is prominently used in both the FANTOM and ENCODE project. MOIRAI is a compact yet flexible workflow system designed to carry out the main steps in data processing and analysis of CAGE data.... -
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Egonet is a program for the collection and analysis of egocentric network data. It helps you create the questionnaire, collect data, and provide general global network measures and data matrixes that can be used for further analysis by other software. Source code is hosted at http://github.com/egonet/egonet.
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Maui
Maui is the Maltcms User Interface
Maui is the Maltcms User Interface, a rich client application for Chromatography-Mass Spectrometry and related research areas. -
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DataCleaner
Data quality analysis, profiling, cleansing, duplicate detection +more
DataCleaner is a data quality analysis application and a solution platform for DQ solutions. It's core is a strong data profiling engine, which is extensible and thereby adds data cleansing, transformations, enrichment, deduplication, matching and merging. Website: http://datacleaner.github.io -
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Adele
Adhoc Data Exploration - Live & Easy
Adele was developed to simplify the daily work with data. Use it as a swiss knife to fill the gap between your work with spreadsheet application like MS Excel and enterprise servers like SAP ERP. Specialized tools like Rapid Miner, KNIME or similiary stuff should not be replaced. But Adele is designed for business people working with spreadsheet applications to analyse their data. There are many technical concepts in an easier way included. For example realtime OLAP, transformations,... -
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GeOxygene aims at providing an open framework which implements OGC/ISO specifications for the development and deployment of geographic (GIS) applications. It is a open source contribution of the COGIT lab. at the IGN (the French National Mapping Agency).
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RoundedImageView
A fast ImageView that supports rounded corners, ovals, and circles
A fast ImageView (and Drawable) that supports rounded corners (and ovals or circles) based on the original example from Romain Guy. It supports many additional features including ovals, rounded rectangles, ScaleTypes and TileModes. There are many ways to create rounded corners in android, but this is the fastest and best one that I know of because it does not create a copy of the original bitmap, does not use a clipPath which is not hardware accelerated and not anti-aliased, does not use... -
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An IDE for people interested in Machine Vision/Image Processing. Written in Java, using JAI. It allows users to view image data and also provides a drag and drop environment that users can create/execute graphs of JAI operators.
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FiMaLib
a financial math library and financial market data database
This project should combine a financial mathematics library with an underlying financial market database (and a set of other tools), which could be used by financial institutions for their financial market data needs as well as by students for research works. -
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A tool for visualizing changes in temperature over time.
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Marid
Free data acquisition and data visualization cross-platform software
Marid is a cross-platform data acquisition and visualization software intended to build complex and hierarchical data acquisition systems. The base concepts of its architecture include: * Graphical deploy configuration builders * Powerful Groovy scripting language * Embedded database ( H2 , HSQLDB) to store data * Cross-platform design (write once, run anywhere) * Embedded GUI-configurable binary/ascii device protocol parser/generator * Deploy manager to deploy firmwares to remote controllers/servers via secure channel * Embedded web-sever * Dynamically linked plugins available from Nexus Repository * Remote monitoring tools * Modular Marid IDE to manage them all -
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This is a tool for patent searching, downloading and analyzing. Analysis focuses on patent-families, citation-networks, assignee-networks , and inventor-networks.
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PMM-Lab
Predictive Microbial Modeling plug-in for KNIME
PMM-Lab is an open-source extension to the Konstanz Information Miner (KNIME). It consists of three components: • a library of KNIME nodes (called PMM-Lab), • a library of “standard” workflows • an HSQL database.to store experimental data and microbial models. Altogether these components are designed to ease and standardize the statistical analysis of experimental microbial data and the development of predictive microbial models (PMM). Users can apply PMM-Lab to proprietary or public... -
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SmartRoot
Semi-automated root image analysis software
...The software supports a sampling-based analysis of root system images, in which detailed information is collected on a limited number of roots selected by the user according to specific research requirements. SmartRoot is an operating system independent freeware based on ImageJ and uses cross-platform standards (XML, SQL, Java) for communication with data analysis softwares. To cite us: Guillaume Lobet, Loïc Pagès and Xavier Draye. A Novel Image Analysis Toolbox Enabling Quantitative Analysis of Root System Architecture. 2011 Plant Physiology, Vol. 157 -
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An open source workbench for chemo- and bioinformatics built on the Eclipse Rich Client Platform (RCP).
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Card Raytracer Benchmark
Short C++/Java/C#/Python benchmark
This is a short C++/Java/C#/Python benchmark. Based on Paul Heckbert's sources. Thank you Paul! -
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UltimateRecyclerView
A RecyclerView(advanced and flexible version of ListView in Android)
UltimateRecyclerView is a RecyclerView(advanced and flexible version of ListView) with pulling to refresh, loading more, swiping to dismiss, draging and drop, animations ,sticky header,show or hide toolbar and FAB when scrolling and many other features.You can use it just like RecyclerView. Notice that UltimateRecyclerView is a project under development. Swipe to refresh(using android.support.v4.widget.SwipeRefreshLayout). Many kinds of animations. Swipe to dismiss. Parallax or normal head... -
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Visualization of Protein-Ligand Graphs
Compute protein graphs. Moved to https://github.com/MolBIFFM/PTGLtools
NOTE: Project moved to https://github.com/MolBIFFM/PTGLtools. The Visualization of Protein-Ligand Graphs (VPLG) software package computes and visualizes protein graphs. It works on the super-secondary structure level and uses the atom coordinates from PDB files and the SSE assignments of the DSSP algorithm. VPLG is command line software. If you do not like typing commands, try our PTGL web server: http://ptgl.uni-frankfurt.de/ -
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The objective of this project is to provide an innovative tool for visualization of multiples genomes. Written in Java, it presents a simple and intuitive user interface to view and manipulate the relationships between groups of genes.
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Jedule
Jedule is Yet another Gantt Chart Viewer