Java-based scientific graphics
Compute protein graphs. Moved to https://github.com/MolBIFFM/PTGLtools
Toolkit and GUI for sequencing data analysis
Effective Linear Algebra and Computer Vision Library with JAVA
Efficient and customizable TreeLayout Algorithm in Java, for NetBeans
A tool for visualization and analysis of logs as sequence diagrams
Editor for Petri nets
Image processing framework to integrate EM software packages.
Pentaho Data Integration ( ETL ) a.k.a Kettle
Integrated pipeline for HT miRNA-Seq data analysis
jchart2d is a real-time charting library written in java.
Graphics generator for pie diagram matrix from spreadsheets
giServer the easy to use and extensible batch and integration server
Workflow Designer, Hive Editor, Pig Editor, File System Browser
User Friendly Data Analysis Tool for Interaction Data
Portable Ubuntu Linux for Scientific Computing