Showing 209 open source projects for "odin-tool"

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  • 1
    Mass-Up

    Mass-Up

    MALDI-TOF data analysis tool

    Mass-Up is an Open-Source mass spectrometry utility for proteomics designed to support the preprocessing and analysis of MALDI-TOF mass spectrometry data. Mass-Up includes several tools and operations to load, preprocess and analyze MALDI-TOF data.
    Downloads: 0 This Week
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  • 2
    Alevin2

    Alevin2

    Tool for the evaluation of ALgorithms for Embedding VIrtual Networks

    ALgorithms for Embedding VIrtual Networks Software to evaluate Virtual Network Embedding Algorithms.
    Downloads: 0 This Week
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  • 3

    MarDRe

    MapReduce-based tool to remove duplicate DNA reads

    MarDRe is a de novo MapReduce-based parallel tool to remove duplicate and near-duplicate DNA reads through the clustering of single-end and paired-end sequences from FASTQ/FASTA datasets. This tool allows bioinformatics to avoid the analysis of not necessary reads, reducing the time of subsequent procedures with the dataset. MarDRe is the Big Data counterpart of ParDRe (link above), which employs HPC technologies (i.e., hybrid MPI/multithreading) to reduce runtime on multicore systems. ...
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  • 4

    HSRA

    Hadoop spliced read aligner for RNA-seq data

    HSRA is a MapReduce-based parallel tool for mapping reads from RNA sequencing (RNA-seq) experiments. RNA-seq analyses typically begin by mapping reads to a reference genome in order to determine the location from which the reads were originated, which is a very time-consuming step. This tool allows bioinformatics researchers to efficiently distribute their mapping tasks over the nodes of a cluster by combining a fast multithreaded spliced aligner (HISAT2) with Apache Hadoop, which is a distributed computing framework for scalable Big Data processing. ...
    Downloads: 0 This Week
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  • 5
    CloverDX

    CloverDX

    Design, automate, operate and publish data pipelines at scale

    Please, visit www.cloverdx.com for latest product versions. Data integration platform; can be used to transform/map/manipulate data in batch and near-realtime modes. Suppors various input/output formats (CSV,FIXLEN,Excel,XML,JSON,Parquet, Avro,EDI/X12,HL7,COBOL,LOTUS, etc.). Connects to RDBMS/JMS/Kafka/SOAP/Rest/LDAP/S3/HTTP/FTP/ZIP/TAR. CloverDX offers 100+ specialized components which can be further extended by creation of "macros" - subgraphs - and libraries, shareable with 3rd...
    Downloads: 0 This Week
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  • 6
    GMOL

    GMOL

    A tool for 3D genome structure visualization

    ...If you use GMOL in your research, please cite: Nowotny, Jackson, Avery Wells, Oluwatosin Oluwadare, Lingfei Xu, Renzhi Cao, Tuan Trieu, Chenfeng He, and Jianlin Cheng. "GMOL: an interactive tool for 3D genome structure visualization." Scientific reports 6 (2016): 20802.
    Downloads: 3 This Week
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  • 7
    Effectopedia
    Effectopedia is open knowledge aggregation and collaboration tool that provides a means of describing adverse outcome pathways in encyclopedic manner.
    Downloads: 0 This Week
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  • 8
    Active Intelligence Server

    Active Intelligence Server

    Reporting, Dashboarding, Analytic, Self-service BI, Ad-hoc reporting

    Active Intelligence Server 2 (AIS) is a data visualization tool and fully featured reporting server which enable users from open source community to host any reports created using BIRT, Jasper and Pentaho community edition allowing organization to leverage open source technologies and enable them to use AIS as a reporting server to deploy their existing and new reports seamlessly onto AIS for secure sharing the information in different file formats and schedule to make system automation and much more. ...
    Downloads: 0 This Week
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  • 9
    RadiationHelper

    RadiationHelper

    Alpha, Beta, Gamma measurements and Nuclide exposure

    RadiationHelper is a data analysis tool for : 1. gross alpha and beta radiation measurement and detector calibration using experimental data (counts acquired by alpha-beta devices). 2. gamma spectroscopy measurements and detector calibration using experimental data (spectra acquired by acquisition software such as Assayer, Gamma Vision, Maestro) 3. gross alpha,beta, gamma detector efficiencies and gamma peak efficiency can be theoretical computed using Monte-Carlo simulation technique for radiation transport (based on EGSnrc toolkit) 4.dose assessment in human body exposed to radiations from nuclides in several common scenarios such as air exposure, water submersion, ground surface, internal ingestion or inhalation. 5. quick dosimetry and shielding computations. ...
    Downloads: 0 This Week
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  • 10

    ProMoVis

    A Tool for Control Structure Selection in Interconnected Processes

    ProMoVis is a software environment which can visualize a process system and analyze this interconnected system using the control structure selection methods. The tool s implemented as either a standalone software for industrial use or as a research version which can run within Matlab, both released under the Apache Open Source license. ProMoVis is not limited to the control structure selection problem as additional analysis methods can be added easily. For the re-use of existing models a Modelica interface is under development. ...
    Downloads: 0 This Week
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  • 11
    SBML2LaTeX

    SBML2LaTeX

    A documentation and report generator for systems biological models

    SBML2LATEX is a tool to convert files in the System Biology Markup Language SBML) format into LATEX files. A convenient online version is available, which allows the user to directly generate report from SBML in form of PDF or TeX, which can be further processed to various file types including DVI, PS, EPS, GIF, JPG, or PNG. SBML2LATEX can also be downloaded and used locally in batch mode or interactively with its Graphical User Interface or several command line options.
    Downloads: 0 This Week
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  • 12
    A spring-based 3D graph layout tool written in Java. Rendering is performed in OpenGL via the JOGL library.
    Downloads: 0 This Week
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  • 13
    DataCleaner

    DataCleaner

    Data quality analysis, profiling, cleansing, duplicate detection +more

    DataCleaner is a data quality analysis application and a solution platform for DQ solutions. It's core is a strong data profiling engine, which is extensible and thereby adds data cleansing, transformations, enrichment, deduplication, matching and merging. Website: http://datacleaner.github.io
    Downloads: 5 This Week
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  • 14
    This is a tool for patent searching, downloading and analyzing. Analysis focuses on patent-families, citation-networks, assignee-networks , and inventor-networks.
    Downloads: 0 This Week
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  • 15
    Temperature Change Viewer
    A tool for visualizing changes in temperature over time.
    Downloads: 0 This Week
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  • 16
    Syntainia
    The objective of this project is to provide an innovative tool for visualization of multiples genomes. Written in Java, it presents a simple and intuitive user interface to view and manipulate the relationships between groups of genes.
    Downloads: 0 This Week
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  • 17
    XAware Data Integration Project

    XAware Data Integration Project

    Create XML and JSON data services from any data source

    Create services to integrate applications & move data of any type. Build data views across DBMS, SOAP, HTTP/REST, Salesforce, SAP, Microsoft, SharePoint, Text, LDAP, FTP sources to read, write & transfer data. Eclipse designer & run-time engine.
    Downloads: 3 This Week
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  • 18
    Open Cezeri Library

    Open Cezeri Library

    Effective Linear Algebra and Computer Vision Library with JAVA

    ...Currently, it holds following main concepts 1- Vision: It can access web cams, imaging source industrial cameras for manuel settings and advanced issues. Studies on accesing Leapmotion and Kinect is still under-development. 2- Machine learning: It uses Weka Software tool and some personel coded ML algorithms 3- CMatrix: Special matrix library called as CMatrix meaning Cezeri Maztrix Class. Actually it is regarded as the core of the OCL. CMatrix supports fluent interface and method chaining.
    Downloads: 0 This Week
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  • 19
    Phanto_maJ

    Phanto_maJ

    build three dimensional structure

    ...In addition, adding a new "basic form" consiste for advanced users to write two short java file ( one describing the new form geometry and the other transcripting this geometry in java3D world ). PhantomaJ is the indispensable tool for who want to create phantom bank of simply an unique complexe structure very easily.
    Downloads: 1 This Week
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  • 20
    A Tool for Retrieval, Visualization and Analysis of biological Pathways. Import a Gene or Protein Set from any Excel file. Automatically find signaling Pathways from KEGG. Integrate your Data in Seconds with a live interactive Force-directed Layout.
    Downloads: 0 This Week
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  • 21

    Informatica Create ctl

    automate Informatica control file creation

    Createinfactl is a Java utility that enables Administrators to fully automate Informatica deployments from the command line by creating thedeployment group control XML file to be used with the pmrep command “deploydeploymentgroup”. Default settings for the control file can be overridden at the command line and works with both static and dynamic deployment groups in the repository. Please review the “Using the Deployment Control File” section in the Informatica Command Reference guide for...
    Downloads: 1 This Week
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  • 22
    MSCViewer

    MSCViewer

    A tool for visualization and analysis of logs as sequence diagrams

    MSCViewer is a tool intended for debugging of control flows in concurrent, distributed systems. The tool loads logs generated by various entities in the system and visualize a sequence diagram chart for events and interactions. The diagram is fully interactive: entity can be added/removed from the diagram and shuffled; events can be filtered, searched, highlighted and annotated with comments.
    Downloads: 0 This Week
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  • 23
    WOLFGANG

    WOLFGANG

    Editor for Petri nets

    Wolfgang is a lightweight tool that allows users to easily create and edit Petri nets and check them against general and workflow specific net properties. Specifically, Wolfgang supports full PNML conform editing functionality of Place-Transition Nets (P/T-Nets) and Colored Petri Nets (CPN) as they are defined in the SEPIA package. Its simple and easy to use interface allows to quickly create Petri nets from scratch, edit them graphically in many ways, store and even export them as PDFs. ...
    Downloads: 0 This Week
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  • 24
    CPS Wildfire Management Tool

    CPS Wildfire Management Tool

    A wildfire decision support system and visualization tool from Emxsys.

    The Wildfire Management Tool (WMT) predicts the potential fire behavior of a wildland fire. WMT incorporates a 3D terrain viewer, the tenets of the Campbell Prediction System (CPS) and the Rothermel fire spread equations to depict fire behavior. WMT is used to adjust tactics & strategies to ensure the safety of firefighters and the effective use of firefighting resources.
    Downloads: 0 This Week
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  • 25
    JBerd

    JBerd

    Java tools for decoding and manipulating BER encoded ASN.1 Files

    A tool for profiling the contents of BER encoded files • JBerd Flattener. A tool for converting BER encoded files to flat files for processing by other facilities • JBerd Decoder objects. A set of Java facilities for writing BER applications that require BER decoding Go to the "files" section (link at the top of this page) to download a pdf of detailed documentation.
    Downloads: 0 This Week
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