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SPASE Model is a collection of tools for working with the structured data model information. Tools can convert the relational version of the data model into various expressions, including XSD, XMI and PDF documentation.
Avenzoar is a one-year exploration of renal cell carcinoma morphology and its related single nucleotide polymorphisms (SNPa) as a method of automating diagnosis of cancer by using a computer-aided decision tree controlled by analytical statistics.
Jipes provides open source Java APIs deeply integrated into the Oracle RDBMS, including an Ant task for building and exporting database objects. A Java Data Cartridge replacing database links is also in process.
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Energy-, mass- or money-flows are described with simular balances. Usually many upsetting tables are used to calculate the balance. The Software Flow visualizes the data in a grafic, zoomable and animated way.
JOELib/JOELib2 is a cheminformatics library which supports SMARTS substructure search, descriptor calculation, processing/filtering pipes, conversion of file formats, 100% pure Java, and interfaces to external programs (e.g. Ghemical) are available.
An extension package to Pentaho Data Integration, providing plug-ins. Steps/job entries can be downloaded independently and each comes with source code in the .zip file. All are licensed as LGPL or GPL.
A real-time graph plotter. While your application is computing and logging results to a CSV file using the LiveGraph Writer API, the plotter lets you visualise and monitor the results live - by instantly plotting charts and graphs of the data.
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Visualization of finite state machines as a network graph. Accepted input files at the moment are: net files exported from xfst (Xerox Finite-State Tool) and lexc files (Finite-State Lexicon Compiler).
@rbre uses X3D to let people create, visualize, browse and share genealogical data, by using 2D individual icons assembled in 3D family trees. @rbre will include P2P functions for sharing.
Azureus Plug-In that allocates the ip adresses of the peers to the country and the city they belong to and visualize that data on a world map or in statistics. This product includes GeoLite data created by MaxMind, available from http://www.maxmind.com/.
OntoViz, an ontology browser is an extension of my undergraduate honors thesis. This helps a user browse ontologies using a variety of graph drawing algorithms. The ontology can be specified using a text file, a local/remote database or a web service.
FormatCheck screens flat files looking for violations in the format of the data. It uses a set of XML files that define the rules for each file format. The Swing front-end allows the user to run the verification, view and print the errors.
XGL Viewer: A simple fast program to load the XGL standard file format and display it using JOGL (OpenGL) allowing the user to move the object around in space, rotate, zoom, spin, ect... This loader should be easily integrated into any program.
phpByteBazar is a web based, operating system independent file management and exchange application with multiple user support and comprehensive indexing and searching capabilities.
A utility for animating molecular vibrations. Normal modes are read from a file automatically determined to be from Aces2, Gamess, PC Gamess, Gaussian 90/92/95/94/98, ADF, Dalton, Jaguar, MOPAC, or Spartan.
The BioDataServer is a database integration system. It implements a mediator-wrapper architecture and offers a SQL interface. The data integration is based on user defined intergrated schema and adapter that wrap any kind of data source.
Object Relational Persistence and Object-Based SQL Query API. Similar to that of Hibernate or JDO but much better structured design. This API has several layers of abstraction to be useful for nearly any situation.
Flow4J is a java framework, that enables the user to model process flow with a gui interface. The flow may include tasks, decisions or calls to other process flows. The saved flow is in a jar file together with its bytecode.