Search Results for "reference management"
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Showing 52 open source projects for "reference management"
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Ethereum ETL
Python scripts for ETL (extract, transform and load) jobs for Ethereum
Python scripts for ETL (extract, transform and load) jobs for Ethereum blocks, transactions, ERC20 / ERC721 tokens, transfers, receipts, logs, contracts, internal transactions. Data is available in Google BigQuery. Ethereum ETL lets you convert blockchain data into convenient formats like CSVs and relational databases. -
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PlantUML
Generate diagrams from textual description
Generate UML diagram from textual description. PlantUML is not affected by the log4j vulnerability. The easiest way to test PlantUML is in an online solution that has PlantUML embedded, such as our online server. After testing, you may want to install PlantUML locally. Run (or have your software call) PlantUML, using sequenceDiagram.txt as input. The output is an image, which either appears in the other software, or is written to an image file on disk. Diagrams are defined using a simple and... -
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CellTypist
A tool for semi-automatic cell type classification, harmonization
CellTypist is an automated tool for cell type classification, harmonization, and integration. Classification, transfer cell type labels from the reference to query dataset. Harmonization, match and harmonize cell types defined by independent datasets. integration, integrate cell and cell types with supervision from harmonization. CellTypist recapitulates cell type structure and biology of independent datasets. Regularised linear models with Stochastic Gradient Descent provide a fast and... -
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SatelliteToolbox.jl
A toolbox for satellite analysis written in julia language
The SatelliteToolbox.jl contains a set of packages with functions to perform analysis and build simulations related to satellites. It is used on a daily basis on projects at the Brazilian National Institute for Space Research (INPE). -
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Durable Streams
The open protocol for real-time sync to client applications
Durable Streams is an open protocol and reference implementation designed to standardize reliable, resumable, real-time streaming between servers and client applications using simple HTTP semantics, filling a gap left by ephemeral technologies like WebSockets and traditional SSE. It defines an append-only, offset-addressable stream primitive where each stream is mapped to a URL that clients can read from or tail, supporting catch-up reads, historical replay, and live updates with robust... -
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Kubernetes History Inspector
A log viewer for Kubernetes troubleshooting
...Although not a beginner-oriented repository, it provides valuable components and reference implementations for advanced users building production systems. -
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EEGLAB
EEGLAB is an open source signal processing environment
EEGLAB is an open source, MATLAB-based interactive environment for analyzing electrophysiological signals such as EEG and MEG. It incorporates powerful tools for data import, preprocessing, independent component analysis (ICA), time-frequency analysis, artifact rejection, and visualization—all within a GUI framework that also supports scripting and plugin extensions. EEGLAB is an open source signal processing environment for electrophysiological signals running on Matlab and Octave (command... -
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DataFramesMeta.jl
Metaprogramming tools for DataFrames
Metaprogramming tools for DataFrames.jl objects to provide more convenient syntax. DataFrames.jl has the functions select, transform, and combine, as well as the in-place select! and transform! for manipulating data frames. DataFramesMeta.jl provides the macros @select, @transform, @combine, @select!, and @transform! to mirror these functions with more convenient syntax. Inspired by dplyr in R and LINQ in C#. -
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Gridap.jl
Grid-based approximation of partial differential equations in Julia
Gridap provides a set of tools for the grid-based approximation of partial differential equations (PDEs) written in the Julia programming language. The library currently supports linear and nonlinear PDE systems for scalar and vector fields, single and multi-field problems, conforming and nonconforming finite element (FE) discretizations, on structured and unstructured meshes of simplices and n-cubes. It also provides methods for time integration. Gridap is extensible and modular. One can... -
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JuliaSyntax
A Julia frontend, written in Julia
A Julia compiler frontend, written in Julia. Read the documentation for more information. JuliaSyntax.jl is used as the new default Julia parser in Julia 1.10. It's highly compatible with Julia's older femtoliter-based parser - It parses all of Base, the standard libraries and the General registry. Some minor differences remain where we've decided to fix bugs or strange behaviors in the reference parser. The AST and tree data structures are usable but their APIs will evolve as we try out... -
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gramm
Gramm is a complete data visualization toolbox for Matlab
Gramm is a MATLAB toolbox that enables the rapid creation of complex, publication-quality figures. Its design philosophy focuses on a declarative approach, where users specify the desired end result, as opposed to the traditional imperative method involving for loops, if/else statements, etc. The MATLAB implementation of gramm is inspired by the "grammar of graphics" principles (Wilkinson 1999) and the ggplot2 library for R by Hadley Wickham. As a reference to this inspiration, gramm stands... -
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JuliaConnectoR
A functionally oriented interface for calling Julia from R
This R-package provides a functionally oriented interface between R and Julia. The goal is to call functions from Julia packages directly as R functions. Julia functions imported via the JuliaConnectoR can accept and return R variables. It is also possible to pass R functions as arguments in place of Julia functions, which allows callbacks from Julia to R. From a technical perspective, R data structures are serialized with an optimized custom streaming format, sent to a (local) Julia TCP... -
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DearPyGui
Graphical User Interface Toolkit for Python with minimal dependencies
Dear PyGui is an easy-to-use, dynamic, GPU-Accelerated, cross-platform graphical user interface toolkit(GUI) for Python. It is “built with” Dear ImGui. Features include traditional GUI elements such as buttons, radio buttons, menus, and various methods to create a functional layout. Additionally, DPG has an incredible assortment of dynamic plots, tables, drawings, debuggers, and multiple resource viewers. DPG is well suited for creating simple user interfaces as well as developing complex... -
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Population Shift Monitoring
Monitor the stability of a Pandas or Spark dataframe
popmon is a package that allows one to check the stability of a dataset. popmon works with both pandas and spark datasets. popmon creates histograms of features binned in time-slices, and compares the stability of the profiles and distributions of those histograms using statistical tests, both over time and with respect to a reference. It works with numerical, ordinal, categorical features, and the histograms can be higher-dimensional, e.g. it can also track correlations between any two... -
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SageMaker Spark Container
Docker image used to run data processing workloads
Apache Spark™ is a unified analytics engine for large-scale data processing. It provides high-level APIs in Scala, Java, Python, and R, and an optimized engine that supports general computation graphs for data analysis. It also supports a rich set of higher-level tools including Spark SQL for SQL and DataFrames, MLlib for machine learning, GraphX for graph processing, and Structured Streaming for stream processing. The SageMaker Spark Container is a Docker image used to run batch data... -
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QUAST
Quality Assessment Tool for Genome Assemblies
QUAST performs fast and convenient quality evaluation and comparison of genome assemblies. It is maintained by the Gurevich lab at HIPS (https://helmholtz-hips.de/en/hmsb). For the most up-to-date description, please visit http://quast.sf.net. Below are just some highlights. QUAST computes several well-known metrics, including contig accuracy, the number of genes discovered, N50, and others, as well as introducing new ones, like NA50 (see details in the paper and manual). A... -
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scArches
Reference mapping for single-cell genomics
Single-cell architecture surgery (scArches) is a package for reference-based analysis of single-cell data. scArches allows your single-cell query data to be analyzed by integrating it into a reference atlas. By mapping your data into an integrated reference you can transfer cell-type annotation from reference to query, identify disease states by mapping to healthy atlas, and advanced applications such as imputing missing data modalities or spatial locations. -
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TexGen is a geometric textile modelling software package to be used for obtaining engineering properties of woven textiles and textile composites. Citing TexGen We would be grateful if you could acknowledge use of TexGen where appropriate and suggest using one of the following references: L P Brown and A C Long. "Modelling the geometry of textile reinforcements for composites: TexGen", Chapter 8 in "Composite reinforcements for optimum performance (Second Edition)", ed. P Boisse,...
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Geodesy.jl
Work with points defined in various coordinate systems
Geodesy is a Julia package for working with points in various world and local coordinate systems. The primary feature of Geodesy is to define and perform coordinate transformations in a convenient and safe framework, leveraging the CoordinateTransformations package. Transformations are accurate and efficient and implemented in native Julia code (with many functions being ported from Charles Karney's GeographicLib C++ library), and some common geodetic datums are provided for convenience. -
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LogicalSets
Integrated Comprehensive Data Architecture & Methodology
This is an advanced data architecture and methodology. A comprehensive Enterprise Resource Management System. A re-usable database with rules for customization, While being a data driven transaction processing engine, this system has very advanced reporting capabilities. This design eliminates up to 90% of business logic due to the way the data is structured. Uses a concept called Table Sets. Has a compound key that tells the programmer what tableset, which record which applet... -
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RigidBodyDynamics.jl
Julia implementation of various rigid body dynamics
RigidBodyDynamics.jl is a rigid body dynamics library in pure Julia. It aims to be user friendly and performant, but also generic in the sense that the algorithms can be called with inputs of any (suitable) scalar types. This means that if fast numeric dynamics evaluations are required, a user can supply Float64 or Float32 inputs. However, if symbolic quantities are desired for analysis purposes, they can be obtained by calling the algorithms with e.g. SymPy.Sym inputs. If gradients are... -
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Learn Julia the Hard Way
Learn Julia the hard way
The Julia base package is pretty big, although at the same time, there are lots of other packages around to expand it with. The result is that on the whole, it is impossible to give a thorough overview of all that Julia can do in just a few brief exercises. Therefore, I had to adopt a little 'bias', or 'slant' if you please, in deciding what to focus on and what to ignore. Julia is a technical computing language, although it does have the capabilities of any general-purpose language and... -
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Data Science Notes
Curated collection of data science learning materials
Data Science Notes is a large, curated collection of data science learning materials, with explanations, code snippets, and structured notes across the typical end-to-end workflow. It spans foundational math and statistics through data wrangling, visualization, machine learning, and practical project organization. The content emphasizes hands-on understanding by pairing narrative notes with runnable examples, making it useful for both self-study and classroom settings. Because it aggregates... -
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Theophanu - Scenebuilding Environment
Controls processing and daylight simulation with hierarchical models.
Theophanu defines the data-structure and the processing logics to control daylight simulations with Radiance on hierarchical models. It was developed together with a detailed simulation model of late antique Hagia Sophia in Istanbul as part of a research project at TU Darmstadt, supported by the DFG German Research Foundation, grant #5194526: "Die Hagia Sophia Justinians in Konstantinopel als Schauplatz weltlicher und geistlicher Inszenierung in der Spätantike"... -
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This is going to be a Java Swing Application that will be used as a quick reference for Java API names. It will feature incremental search and filtering so that searching efficiency is improved. It will be very simple and a good way to statistically analyze java api's.
