Showing 350 open source projects for "command-line kill linux"

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  • 1
    Code Surfer

    Code Surfer

    Rad code slides

    Code Surfer is a presentation tool for creating interactive code-focused slides in MDX Deck. It helps presenters explain code by adding highlighting, zooming, scrolling, focusing, and morphing between code states. The project is designed for technical talks, workshops, tutorials, and conference demos where static screenshots are not expressive enough. It lets authors wrap code blocks inside Code Surfer components and control how the audience moves through the code. This makes it easier to...
    Downloads: 1 This Week
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  • 2
    tikzcd-editor

    tikzcd-editor

    A simple visual editor for creating commutative diagrams

    A simple visual editor for creating commutative diagrams.
    Downloads: 0 This Week
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  • 3

    OpenData

    Open source coronavirus 2019 sample application using open data

    Open source software using open data with template code to demonstrate getting open government data such as the coronavirus 2019 (COVID-19). It takes data in feed format such as CSV, JSON, etc. to process maps, pie charts, line/bar graphs, HTML table that can be copied and pasted to spreadsheets such as Excel. The purpose is to provide template code to access open data readily available from official government websites useful for regional data analysis, latest information at a glance with...
    Downloads: 0 This Week
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  • 4
    The OpenGEREA is a open enrichment analysis framework for gene expression regulation data analysis.
    Downloads: 0 This Week
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  • 5

    TSA_CRAFT

    Automatic command line tool for TSA data analysis

    DSF is a high-throughput platform of TSA assay to screen various conditions that affect protein stability. To facilitate TSA data analysis, we developed an automatic tool "TSA-CRAFT". TSA-CRAFT was developed by integrating PERL script and Gnuplot. PERL scripts manage the entire workflow and data processing procedures of TSA data analysis. On the other hand, Gnuplot takes over the curve fitting and result presentation works. All analysed results are coded in an html file that can be easily...
    Downloads: 4 This Week
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  • 6
    Olex2 is visualisation software for small-molecule crystallography developed at Durham University/EPSRC. It provides comprehensive tools for crystallographic model manipulation for the end user and an extensible development framework for programmers. The project has been supported by Olexsys Ltd since 2010.
    Downloads: 0 This Week
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  • 7
    AQUATONE

    AQUATONE

    A tool for domain flyovers

    Aquatone is a tool for visual inspection of websites across a large amount of hosts and is convenient for quickly gaining an overview of HTTP-based attack surface. Aquatone is designed to be as easy to use as possible and to integrate with your existing toolset with no or minimal glue. Aquatone is started by piping output of a command into the tool. It doesn't really care how the piped data looks as URLs, domains, and IP addresses will be extracted with regular expression pattern matching....
    Downloads: 0 This Week
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  • 8
    md2googleslides

    md2googleslides

    Generate Google Slides from markdown

    Generate Google Slides from markdown & HTML. Run from the command line or embed in another application. This project was developed as an example of how to use the Slides API. While it does not yet produce stunningly beautiful decks, you are encouraged to use this tool for quickly prototyping presentations. The first time the command is run you will be prompted for authorization. OAuth token credentials are stored locally in a file named ~/.md2googleslides/credentials.json. Each time you will...
    Downloads: 2 This Week
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  • 9
    julia-vim

    julia-vim

    Vim support for Julia.

    Vim support for Julia. This plug-in adds some functionality to substitute LaTeX code sequences (e.g. \alpha) with corresponding Unicode symbols (e.g. α). By default, these substitutions must be triggered explicitly by pressing the Tab key, as in the Julia command line (the REPL); however, an automatic, as-you-type mode can also be activated, and a method based on keymap is also available. This feature also works in command mode, e.g. when searching the files with the / or ? commands, but the...
    Downloads: 0 This Week
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  • 10
    SIVIC
    SIVIC is an open-source, standards-based software framework and application suite for processing and visualization of DICOM MR Spectroscopy data. Through the use of DICOM, SIVIC aims to facilitate the application of MRS in medical imaging studies.
    Downloads: 8 This Week
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  • 11
    DocOpt.jl

    DocOpt.jl

    Command line arguments parser

    DocOpt.jl is a port of docopt written in the Julia language. docopt generates a command-line arguments parser from human-readable usage patterns. The DocOpt module exports just one function, docopt, which takes multiple arguments but all of them except the first one are optional.
    Downloads: 0 This Week
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  • 12
    MaRC (Map Reprojections and Conversions) is a C++ library and program designed to produce map projections of bodies thay may be represented as oblate spheroids from digital images (e.g. FITS images) or computed values (e.g. incidence and emission angles).
    Downloads: 0 This Week
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  • 13

    MarDRe

    MapReduce-based tool to remove duplicate DNA reads

    MarDRe is a de novo MapReduce-based parallel tool to remove duplicate and near-duplicate DNA reads through the clustering of single-end and paired-end sequences from FASTQ/FASTA datasets. This tool allows bioinformatics to avoid the analysis of not necessary reads, reducing the time of subsequent procedures with the dataset. MarDRe is the Big Data counterpart of ParDRe (link above), which employs HPC technologies (i.e., hybrid MPI/multithreading) to reduce runtime on multicore systems....
    Downloads: 0 This Week
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  • 14

    HSRA

    Hadoop spliced read aligner for RNA-seq data

    HSRA is a MapReduce-based parallel tool for mapping reads from RNA sequencing (RNA-seq) experiments. RNA-seq analyses typically begin by mapping reads to a reference genome in order to determine the location from which the reads were originated, which is a very time-consuming step. This tool allows bioinformatics researchers to efficiently distribute their mapping tasks over the nodes of a cluster by combining a fast multithreaded spliced aligner (HISAT2) with Apache Hadoop, which is a...
    Downloads: 0 This Week
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  • 15
    The SourceForge OpenRasMol project is an adjunct to the RasMol and OpenrasMol project at http://rasmol.org. It is hoped that the SourceForge OpenRasMol project will provide a convenient focal point for active collaborative contributions.
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    Downloads: 220 This Week
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  • 16
    pyspread

    pyspread

    Python spreadsheet application

    Pyspread is a non-traditional spreadsheet application that is based on and written in the programming language Python. The goal of pyspread is to be the most pythonic spreadsheet. Pyspread expects Python expressions in its grid cells, which makes a spreadsheet specific language obsolete. Each cell returns a Python object that can be accessed from other cells. These objects can represent anything including lists or matrices. Dependencies + Python (>=2.7, <3.0) + numpy...
    Downloads: 0 This Week
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  • 17
    scriptLattes is an open-source system to create academic reports of groups based on curricula vitae of the Brazilian Lattes Database.
    Downloads: 3 This Week
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  • 18
    TXM-Wizard
    Toolbox for handling X-ray transmission image data collected using the Xradia TXM system. We are constantly updating the code to implement other file formats as well - suggestions are welcome. Main articles: -) TXM-Wizard: a program for advanced data collection and evaluation in full-field transmission X-ray microscopy, Journal of Synchrotron Radiation, 19, 281-287. (2012) http://scripts.iucr.org/cgi-bin/paper_yard?hf5192 -) 3D elemental sensitive imaging using transmission X-ray...
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    Downloads: 35 This Week
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  • 19

    paralline

    Big Data tool

    Paralline executes a python function (or lambda function) or a script over each line of huge text files, in parallel processes and aggregates the result to a list.
    Downloads: 0 This Week
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  • 20
    xsv

    xsv

    A fast CSV command line toolkit written in Rust

    xsv is a command line program for indexing, slicing, analyzing, splitting and joining CSV files. Commands should be simple, fast and composable. Simple tasks should be easy. Performance trade offs should be exposed in the CLI interface. Composition should not come at the expense of performance. Let's say you're playing with some of the data from the Data Science Toolkit, which contains several CSV files. Maybe you're interested in the population counts of each city in the world. So grab the...
    Downloads: 0 This Week
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  • 21
    Sagacity

    Sagacity

    Security Assessment Data Management and Analysis Tool

    We have migrated development of Sagacity to GitHub at https://github.com/cyberperspectives/sagacity Sagacity is a vulnerability assessment and STIG compliance data management tool designed to make security testing more efficient, effective and complete. Security assessments, especially those done for DoD and Federal organizations, produce tremendous amounts of scan and compliance data that security engineers must sort through and deconflict, identify untested requirements, and somehow...
    Downloads: 0 This Week
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  • 22
    As of 2018-06-28, this project has moved to https://github.com/AdamaJava. This copy of the code will remain but all new code updates and releases will be from the new site. Java code developed by the Australian ICGC team for operating on next-generation sequencing data. This code is currently being maintained and expanded by the QIMR Berghofer Genome Informatics team (http://www.qimrberghofer.edu.au/lab/genome-informatics/) More details and documentation can be found on the...
    Downloads: 0 This Week
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  • 23
    Vaex

    Vaex

    Out-of-Core hybrid Apache Arrow/NumPy DataFrame for Python

    Data science solutions, insights, dashboards, machine learning, deployment. We start at 100GB. Vaex is a high-performance Python library for lazy Out-of-Core data frames (similar to Pandas), to visualize and explore big tabular datasets. It calculates statistics such as mean, sum, count, standard deviation etc, on an N-dimensional grid for more than a billion (10^9) samples/rows per second. Visualization is done using histograms, density plots and 3d volume rendering, allowing interactive...
    Downloads: 0 This Week
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  • 24
    Lata is a file format to store CFD results, with special care for huge datasets. This project provides tools for manipulate and convert the lata files. This project is part of the VisIt plugin reader. The Snorky3D sofware is presented in the following conference communication: Visualisation of CFD computations: millions of particles in real time with Snorky3D Visu 2012, september 2012, Paris, France http://visu2012.imag.fr/articles/mathieu.pdf
    Downloads: 0 This Week
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  • 25
    JPIV

    JPIV

    Particle Image Velocimetry

    JPIV is a platform independent, graphical stand-alone application for Particle Image Velocimetry (PIV) written in Java. PIV is an optical technique for measuring fluid flow velocities. JPIV moved to GitHub. Please visit us at: https://eguvep.github.io/jpiv/
    Downloads: 0 This Week
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