Showing 1881 open source projects for "gnu linux"

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  • 1
    VividSTORM

    VividSTORM

    Correlated confocal and SMLM data visualization and analysis

    VividSTORM is a free and open-source standalone software with graphical user interface, for the correlated visualization and analysis of superresolution single molecule localization microscopy (SMLM) molecule lists and conventional pixel intensity-based images. The localization points (LPs) within this ROI can be analyzed using the selected built-in functions. NOTE: If you encounter issues not addressed by the user guide, please contact by message on this site or via e-mail for...
    Downloads: 0 This Week
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  • 2
    MaRC (Map Reprojections and Conversions) is a C++ library and program designed to produce map projections of bodies thay may be represented as oblate spheroids from digital images (e.g. FITS images) or computed values (e.g. incidence and emission angles).
    Downloads: 0 This Week
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  • 3
    CloverDX

    CloverDX

    Design, automate, operate and publish data pipelines at scale

    Please, visit www.cloverdx.com for latest product versions. Data integration platform; can be used to transform/map/manipulate data in batch and near-realtime modes. Suppors various input/output formats (CSV,FIXLEN,Excel,XML,JSON,Parquet, Avro,EDI/X12,HL7,COBOL,LOTUS, etc.). Connects to RDBMS/JMS/Kafka/SOAP/Rest/LDAP/S3/HTTP/FTP/ZIP/TAR. CloverDX offers 100+ specialized components which can be further extended by creation of "macros" - subgraphs - and libraries, shareable with 3rd...
    Downloads: 8 This Week
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  • 4
    pyspread

    pyspread

    Python spreadsheet application

    Pyspread is a non-traditional spreadsheet application that is based on and written in the programming language Python. The goal of pyspread is to be the most pythonic spreadsheet. Pyspread expects Python expressions in its grid cells, which makes a spreadsheet specific language obsolete. Each cell returns a Python object that can be accessed from other cells. These objects can represent anything including lists or matrices. Dependencies + Python (>=2.7, <3.0) + numpy...
    Downloads: 0 This Week
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  • 5
    The SourceForge OpenRasMol project is an adjunct to the RasMol and OpenrasMol project at http://rasmol.org. It is hoped that the SourceForge OpenRasMol project will provide a convenient focal point for active collaborative contributions.
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    Downloads: 417 This Week
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  • 6
    Kitchen garden aid
    An easy to use application to design your kitchen garden or your house farm. Helps you plan your plants ( vegetables, fruit trees, herbs, flowers ) so that it respects the rules of crop rotation and companion planting. Based on square foot gardening. Requires Java 8.
    Downloads: 5 This Week
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  • 7

    MarDRe

    MapReduce-based tool to remove duplicate DNA reads

    MarDRe is a de novo MapReduce-based parallel tool to remove duplicate and near-duplicate DNA reads through the clustering of single-end and paired-end sequences from FASTQ/FASTA datasets. This tool allows bioinformatics to avoid the analysis of not necessary reads, reducing the time of subsequent procedures with the dataset. MarDRe is the Big Data counterpart of ParDRe (link above), which employs HPC technologies (i.e., hybrid MPI/multithreading) to reduce runtime on multicore systems....
    Downloads: 0 This Week
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  • 8

    HSRA

    Hadoop spliced read aligner for RNA-seq data

    HSRA is a MapReduce-based parallel tool for mapping reads from RNA sequencing (RNA-seq) experiments. RNA-seq analyses typically begin by mapping reads to a reference genome in order to determine the location from which the reads were originated, which is a very time-consuming step. This tool allows bioinformatics researchers to efficiently distribute their mapping tasks over the nodes of a cluster by combining a fast multithreaded spliced aligner (HISAT2) with Apache Hadoop, which is a...
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  • 9
    apache spark data pipeline osDQ

    apache spark data pipeline osDQ

    osDQ dedicated to create apache spark based data pipeline using JSON

    This is an offshoot project of open source data quality (osDQ) project https://sourceforge.net/projects/dataquality/ This sub project will create apache spark based data pipeline where JSON based metadata (file) will be used to run data processing , data pipeline , data quality and data preparation and data modeling features for big data. This uses java API of apache spark. It can run in local mode also. Get json example at https://github.com/arrahtech/osdq-spark How to...
    Downloads: 1 This Week
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  • 10
    rattleCAD
    A graphical tool to design a bicycle (s) geometry and derive drawings from its configuration rattleCAD moved to www.rattleCAD.com
    Downloads: 0 This Week
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  • 11
    CapAnalysis

    CapAnalysis

    PCAP from another point of view

    CapAnalysis is a web visual tool for information security specialists, system administrators and everyone who needs to analyze large amounts of captured network traffic. Analyze TCP and UDP streams Support multible datasets Perform deep packet inspection Support filtering capability Source Code: https://github.com/xplico/CapAnalysis
    Downloads: 14 This Week
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  • 12
    MoCalc2012

    MoCalc2012

    GUI for MOPAC, DFTB+, GAMESS, Firefly, NWChem, ORCA and PSI4

    MoCalc2012 is a simple, efficient Graphical User Interface for MOPAC, DFTB+, GAMESS(US), Firefly, NWChem, ORCA and PSI4.
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    Downloads: 8 This Week
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  • 13
    GMOL

    GMOL

    A tool for 3D genome structure visualization

    GMOL is an application designed to visualize genome structure in 3D. It allows users to view the genome structure at multiple scales, including: global, chromosome, loci, fiber, nucleosome, and nucleotide. This software was built upon the pre-existing Jmol package by Prof. Cheng's group. The software is developed in Prof. Jianlin Cheng's Bioinformatics, Data Mining and Machine Learning Laboratory in the Computer Science Department at the University of Missouri - Columbia, USA. The project...
    Downloads: 0 This Week
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  • 14
    Effectopedia
    Effectopedia is open knowledge aggregation and collaboration tool that provides a means of describing adverse outcome pathways in encyclopedic manner.
    Downloads: 1 This Week
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  • 15
    Novembre

    Novembre

    STM data analysis

    A tool for visualisation and analysis of STM and STS results. Currently supports RHK, WinSPM, Nanonis and Createc file formats. Other formats can be added. Tools are made available by plugins and are currently focused on spectroscopy manipulation.
    Downloads: 0 This Week
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  • 16
    Alfresco Audit Analysis and Reporting
    With Alfresco Audit Analysis and Reporting (A.A.A.R.) is provided a solution to extract, store and query audit data together with the document/folder informations at a very detailed level, with the goal to be useful to the end-user in a very easy way. To reach that goal, to make the data more friendly for the end-user, the data are published in reports in well-known formats (pdf, Microsoft Excel, csv, etc.) and stored directly in Alfresco as static documents organized in folders, versioned,...
    Downloads: 0 This Week
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  • 17

    Fudaa

    https://gitlab.com/fudaa

    Official site: https://fudaa-project.atlassian.net/wiki/spaces/FUDAA/overview Sources moved to GitLab: https://gitlab.com/fudaa
    Downloads: 5 This Week
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  • 18
    PyTom

    PyTom

    http://www.sciencedirect.com/science/article/pii/S1047847711003492

    PyTom is a toolbox developed for interpreting cryo electron tomography data. All steps from reconstruction, localization, alignment and classification are covered with standard and improved methods. Please sign up to our mailing list to keep up with the most recent updates and versions.
    Downloads: 2 This Week
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  • 19
    scriptLattes is an open-source system to create academic reports of groups based on curricula vitae of the Brazilian Lattes Database.
    Downloads: 3 This Week
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  • 20
    Redis Desktop Manager

    Redis Desktop Manager

    :wrench: Cross-platform GUI management tool for Redis

    Redis Desktop Manager is a fast, open source Redis database management application based on Qt 5. It's available for Windows, Linux and MacOS and offers an easy-to-use GUI to access your Redis DB. With Redis Desktop Manager you can perform some basic operations such as view keys as a tree, CRUD keys and execute commands via shell. It also supports SSL/TLS encryption, SSH tunnels and cloud Redis instances, such as: Amazon ElastiCache, Microsoft Azure Redis Cache and Redis Labs.
    Downloads: 0 This Week
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  • 21
    GDL - GNU Data Language, a free IDL (Interactive Data Language, see http://ittvis.com/idl/) compatible incremental compiler.
    Downloads: 0 This Week
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  • 22
    Plots a parameterized family of curves
    Downloads: 0 This Week
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  • 23
    Downloads: 0 This Week
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  • 24
    PyX is a Python package for the creation of EPS, PS, PDF and SVG files. It combines an abstraction of the PostScript drawing model with a TeX/LaTeX interface. Complex tasks like 2d and 3d plots in publication-ready quality are built out of these primitives.
    Downloads: 0 This Week
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  • 25
    As of 2018-06-28, this project has moved to https://github.com/AdamaJava. This copy of the code will remain but all new code updates and releases will be from the new site. Java code developed by the Australian ICGC team for operating on next-generation sequencing data. This code is currently being maintained and expanded by the QIMR Berghofer Genome Informatics team (http://www.qimrberghofer.edu.au/lab/genome-informatics/) More details and documentation can be found on the...
    Downloads: 2 This Week
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