Showing 1228 open source projects for "json-java"

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  • 1
    EntOpt Layout

    EntOpt Layout

    Relative entropy optimization network layout plugin

    The goal of this project is to implement a graph layout / network visualization algorithm as a Java plugin for Cytoscape (http://cytoscape.org/), using a recently published relative entropy optimization based method, called Unified Data Representation (Kovács IA et al. Sci Rep. 2015). If you are using the plugin, please cite: Ágg B, Császár A, Szalay-Bekő M, Veres DV, Mizsei R, Ferdinandy P, Csermely P and Kovács IA (2019) The EntOptLayout Cytoscape plug-in for the efficient visualization of major protein complexes in protein-protein interaction and signalling networks, Bioinformatics 35(21):4490-4492 https://academic.oup.com/bioinformatics/article/35/21/4490/5475596 Our detailed Tutorial on the use of the plugin: https://suopte.com/entopt_2_1_tutorial_20200518.pdf A video about the version 2.1: http://suopte.com/entopt_2_1_tutorial_video.mp4 Don't hesitate to send any questions, comments or bug reports also to agg.bence {at} med.semmelweis-univ.hu.
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  • 2
    A spring-based 3D graph layout tool written in Java. Rendering is performed in OpenGL via the JOGL library.
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  • 3

    MusicDNA

    Experience your favorite music in a unique way

    MusicDNA is a music player unlike any other. It is an Android music player that renders beautiful DNA (visualization) of the currently playing music. It does this through the use of the Visualizer Class, and is inspired by paullewis's music-dna. It uses the FFT Data supplied by the Visualizer class of Android , calculating the Amplitude at that exact moment and using this to plot the DNA. MusicDNA fuses the functionality of traditional music players with stunning visualizations. In this...
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  • 4
    DSTK - DataScience ToolKit

    DSTK - DataScience ToolKit

    DSTK - DataScience ToolKit for All of Us

    ...While JASP offers more statistical features, DSTK tends to be a broad solution workbench, including text analysis and predictive analytics features. Of course you may specify JASP for advanced data editing and RapidMiner for advanced prediction modeling. DSTK is written in C#, Java and Python to interface with R, NLTK, and Weka. It can be expanded with plugins using R Scripts. We have also created plugins for more statistical functions, and Big Data Analytics with Microsoft Azure HDInsights (Spark Server) with Livy. License: R, RStudio, NLTK, SciPy, SKLearn, MatPlotLib, Weka, ... each has their own licenses.
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  • 5

    MOIRAI

    Simple Scientific Workflow System for CAGE Analysis

    Cap analysis of gene expression (CAGE) is a sequencing based technology to capture the 5’ ends of RNAs in a biological sample. After mapping, a CAGE peak on the genome indicates the position of an active transcriptional start site (TSS) and the number of reads correspond to its expression level. CAGE is prominently used in both the FANTOM and ENCODE project. MOIRAI is a compact yet flexible workflow system designed to carry out the main steps in data processing and analysis of CAGE data....
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  • 6
    DataCleaner

    DataCleaner

    Data quality analysis, profiling, cleansing, duplicate detection +more

    DataCleaner is a data quality analysis application and a solution platform for DQ solutions. It's core is a strong data profiling engine, which is extensible and thereby adds data cleansing, transformations, enrichment, deduplication, matching and merging. Website: http://datacleaner.github.io
    Downloads: 6 This Week
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  • 7
    Epidat

    Epidat

    Statistical data analysis

    Programa multiplataforma de libre distribución para el análisis estadístico y epidemiológico de datos. Free distribution cross-platform program for statistical and epidemiological analysis of data. Sitio web: http://www.sergas.es/Saude-publica/EPIDAT Souceforge: https://sourceforge.net/projects/epidat/ Wikipedia: https://es.wikipedia.org/wiki/Epidat
    Downloads: 23 This Week
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  • 8
    Hetionet

    Hetionet

    Hetionet: an integrative network of disease

    Hetionet is a hetnet — network with multiple node and edge (relationship) types — which encodes biology. The hetnet was designed for Project Rephetio, which aims to systematically identify why drugs work and predict new therapies for drugs. The JSON and Neo4j formats contain node and edge properties, which are absent in the TSV and matrix formats, including licensing information. Therefore the recommended formats are JSON and Neo4j. Our hetio package in Python reads the JSON format, but it is otherwise a simple yet new format. The Neo4j graph database has an established and thriving ecosystem. ...
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  • 9
    Maui

    Maui

    Maui is the Maltcms User Interface

    Maui is the Maltcms User Interface, a rich client application for Chromatography-Mass Spectrometry and related research areas.
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  • 10
    Egonet is a program for the collection and analysis of egocentric network data. It helps you create the questionnaire, collect data, and provide general global network measures and data matrixes that can be used for further analysis by other software. Source code is hosted at http://github.com/egonet/egonet.
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    Downloads: 6 This Week
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  • 11

    Adele

    Adhoc Data Exploration - Live & Easy

    Adele was developed to simplify the daily work with data. Use it as a swiss knife to fill the gap between your work with spreadsheet application like MS Excel and enterprise servers like SAP ERP. Specialized tools like Rapid Miner, KNIME or similiary stuff should not be replaced. But Adele is designed for business people working with spreadsheet applications to analyse their data. There are many technical concepts in an easier way included. For example realtime OLAP, transformations,...
    Downloads: 2 This Week
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  • 12
    json4sapnw

    json4sapnw

    Another JSON extension for SAP ABAP

    This is a SAP addon to handle JSON data within SAP ABAP Programs. It comes in the customer exchange namespace /CEX/ and has to be installed as an SAP transport request. The addon supports object oriented JSON methods to process deep structured JSON data. Building JSON data from SAP data objects and parsing JSON data back to SAP data objects are supported. See the WIKI for some examples.
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  • 13
    GeOxygene
    GeOxygene aims at providing an open framework which implements OGC/ISO specifications for the development and deployment of geographic (GIS) applications. It is a open source contribution of the COGIT lab. at the IGN (the French National Mapping Agency).
    Downloads: 1 This Week
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  • 14
    Better SQL in java! Offering a seamless java class mapping and SQL-like domain-specific language implemented for number of commercial and open-source DBMS
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  • 15
    RoundedImageView

    RoundedImageView

    A fast ImageView that supports rounded corners, ovals, and circles

    A fast ImageView (and Drawable) that supports rounded corners (and ovals or circles) based on the original example from Romain Guy. It supports many additional features including ovals, rounded rectangles, ScaleTypes and TileModes. There are many ways to create rounded corners in android, but this is the fastest and best one that I know of because it does not create a copy of the original bitmap, does not use a clipPath which is not hardware accelerated and not anti-aliased, does not use...
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  • 16
    An IDE for people interested in Machine Vision/Image Processing. Written in Java, using JAI. It allows users to view image data and also provides a drag and drop environment that users can create/execute graphs of JAI operators.
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  • 17

    FiMaLib

    a financial math library and financial market data database

    This project should combine a financial mathematics library with an underlying financial market database (and a set of other tools), which could be used by financial institutions for their financial market data needs as well as by students for research works.
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  • 18
    SmartRoot

    SmartRoot

    Semi-automated root image analysis software

    ...The software supports a sampling-based analysis of root system images, in which detailed information is collected on a limited number of roots selected by the user according to specific research requirements. SmartRoot is an operating system independent freeware based on ImageJ and uses cross-platform standards (XML, SQL, Java) for communication with data analysis softwares. To cite us: Guillaume Lobet, Loïc Pagès and Xavier Draye. A Novel Image Analysis Toolbox Enabling Quantitative Analysis of Root System Architecture. 2011 Plant Physiology, Vol. 157
    Downloads: 4 This Week
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  • 19
    PMM-Lab

    PMM-Lab

    Predictive Microbial Modeling plug-in for KNIME

    PMM-Lab is an open-source extension to the Konstanz Information Miner (KNIME). It consists of three components: • a library of KNIME nodes (called PMM-Lab), • a library of “standard” workflows • an HSQL database.to store experimental data and microbial models. Altogether these components are designed to ease and standardize the statistical analysis of experimental microbial data and the development of predictive microbial models (PMM). Users can apply PMM-Lab to proprietary or public...
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  • 20
    Marid

    Marid

    Free data acquisition and data visualization cross-platform software

    Marid is a cross-platform data acquisition and visualization software intended to build complex and hierarchical data acquisition systems. The base concepts of its architecture include: * Graphical deploy configuration builders * Powerful Groovy scripting language * Embedded database ( H2 , HSQLDB) to store data * Cross-platform design (write once, run anywhere) * Embedded GUI-configurable binary/ascii device protocol parser/generator * Deploy manager to deploy firmwares to remote...
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  • 21
    This is a tool for patent searching, downloading and analyzing. Analysis focuses on patent-families, citation-networks, assignee-networks , and inventor-networks.
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  • 22
    phpMyOLAP

    phpMyOLAP

    OLAP tool for PHP-MySQL systems.

    OLAP application in PHP for MySQL databases. No java-based web service needed. No MDX language to use. Download FooodMart Database for MySQL http://pentaho.dlpage.phi-integration.com/mondrian/mysql-foodmart-database On line demo and information at http://phpmyolap.altervista.org/
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  • 23
    Temperature Change Viewer
    A tool for visualizing changes in temperature over time.
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  • 24
    An open source workbench for chemo- and bioinformatics built on the Eclipse Rich Client Platform (RCP).
    Downloads: 64 This Week
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  • 25

    Card Raytracer Benchmark

    Short C++/Java/C#/Python benchmark

    This is a short C++/Java/C#/Python benchmark. Based on Paul Heckbert's sources. Thank you Paul!
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