Showing 9 open source projects for "package installer linux"

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  • 1
    harmonypy

    harmonypy

    Integrate multiple high-dimensional datasets with fuzzy k-means

    Harmony is an algorithm for integrating multiple high-dimensional datasets. harmonypy is a port of the harmony R package by Ilya Korsunsky. Harmony is a general-purpose R package with an efficient algorithm for integrating multiple data sets. It is especially useful for large single-cell datasets such as single-cell RNA-seq.
    Downloads: 0 This Week
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  • 2
    reticulate

    reticulate

    R Interface to Python

    reticulate is an R package from Posit that creates seamless interoperability between R and Python. It lets you call Python modules, classes, and functions from within R, automatically translating between R and Python data structures. Useful for combining Python tooling with R projects, data analysis, and RMarkdown reports.
    Downloads: 0 This Week
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  • 3
    Mara Pipelines

    Mara Pipelines

    A lightweight opinionated ETL framework, halfway between plain scripts

    This package contains a lightweight data transformation framework with a focus on transparency and complexity reduction. Data integration pipelines as code: pipelines, tasks and commands are created using declarative Python code. PostgreSQL as a data processing engine. Extensive web ui. The web browser as the main tool for inspecting, running and debugging pipelines. GNU make semantics. Nodes depend on the completion of upstream nodes. No data dependencies or data flows. No in-app data...
    Downloads: 0 This Week
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  • 4
    scArches

    scArches

    Reference mapping for single-cell genomics

    Single-cell architecture surgery (scArches) is a package for reference-based analysis of single-cell data. scArches allows your single-cell query data to be analyzed by integrating it into a reference atlas. By mapping your data into an integrated reference you can transfer cell-type annotation from reference to query, identify disease states by mapping to healthy atlas, and advanced applications such as imputing missing data modalities or spatial locations.
    Downloads: 0 This Week
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  • 5
    Harmony Data Integration

    Harmony Data Integration

    Fast, sensitive and accurate integration of single-cell data

    Harmony is a general-purpose R package with an efficient algorithm for integrating multiple data sets. It is especially useful for large single-cell datasets such as single-cell RNA-seq. Harmony has been tested on R versions =4. Please consult the DESCRIPTION file for more details on required R packages. Harmony has been tested on Linux, OS X, and Windows platforms.
    Downloads: 0 This Week
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  • 6
    Grinn

    Grinn

    graph database and R package for omic data integration

    http://kwanjeeraw.github.io/grinn/
    Downloads: 0 This Week
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  • 7
    Hetionet

    Hetionet

    Hetionet: an integrative network of disease

    Hetionet is a hetnet — network with multiple node and edge (relationship) types — which encodes biology. The hetnet was designed for Project Rephetio, which aims to systematically identify why drugs work and predict new therapies for drugs. The JSON and Neo4j formats contain node and edge properties, which are absent in the TSV and matrix formats, including licensing information. Therefore the recommended formats are JSON and Neo4j. Our hetio package in Python reads the JSON format, but it...
    Downloads: 2 This Week
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  • 8
    An extension package to Pentaho Data Integration, providing plug-ins. Steps/job entries can be downloaded independently and each comes with source code in the .zip file. All are licensed as LGPL or GPL.
    Downloads: 0 This Week
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  • 9
    N-Browse is a client-server package for interactive visualization of network data with heterogeneous types of links, intended for ease of use and designed using a generic database schema for data integration and visualization.
    Downloads: 0 This Week
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