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Showing 16 open source projects for "python source"
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reticulate
R Interface to Python
reticulate is an R package from Posit that creates seamless interoperability between R and Python. It lets you call Python modules, classes, and functions from within R, automatically translating between R and Python data structures. Useful for combining Python tooling with R projects, data analysis, and RMarkdown reports. -
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Airbyte
Data integration platform for ELT pipelines from APIs, databases
We believe that only an open-source solution to data movement can cover the long tail of data sources while empowering data engineers to customize existing connectors. Our ultimate vision is to help you move data from any source to any destination. Airbyte already provides the largest catalog of 300+ connectors for APIs, databases, data warehouses, and data lakes. Moving critical data with Airbyte is as easy and reliable as flipping on a switch. Our teams process more than 300 billion rows... -
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CellTypist
A tool for semi-automatic cell type classification, harmonization
CellTypist is an automated tool for cell type classification, harmonization, and integration. Classification, transfer cell type labels from the reference to query dataset. Harmonization, match and harmonize cell types defined by independent datasets. integration, integrate cell and cell types with supervision from harmonization. CellTypist recapitulates cell type structure and biology of independent datasets. Regularised linear models with Stochastic Gradient Descent provide a fast and... -
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harmonypy
Integrate multiple high-dimensional datasets with fuzzy k-means
Harmony is an algorithm for integrating multiple high-dimensional datasets. harmonypy is a port of the harmony R package by Ilya Korsunsky. Harmony is a general-purpose R package with an efficient algorithm for integrating multiple data sets. It is especially useful for large single-cell datasets such as single-cell RNA-seq. -
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KubeRay
A toolkit to run Ray applications on Kubernetes
KubeRay is a powerful, open-source Kubernetes operator that simplifies the deployment and management of Ray applications on Kubernetes. It offers several key components. KubeRay core: This is the official, fully-maintained component of KubeRay that provides three custom resource definitions, RayCluster, RayJob, and RayService. These resources are designed to help you run a wide range of workloads with ease. -
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Recap
Recap tracks and transform schemas across your whole application
Recap is a schema language and multi-language toolkit to track and transform schemas across your whole application. Your data passes through web services, databases, message brokers, and object stores. Recap describes these schemas in a single language, regardless of which system your data passes through. Recap schemas can be defined in YAML, TOML, JSON, XML, or any other compatible language. -
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Dagster
An orchestration platform for the development, production
Dagster is an orchestration platform for the development, production, and observation of data assets. Dagster as a productivity platform: With Dagster, you can focus on running tasks, or you can identify the key assets you need to create using a declarative approach. Embrace CI/CD best practices from the get-go: build reusable components, spot data quality issues, and flag bugs early. Dagster as a robust orchestration engine: Put your pipelines into production with a robust... -
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Mara Pipelines
A lightweight opinionated ETL framework, halfway between plain scripts
This package contains a lightweight data transformation framework with a focus on transparency and complexity reduction. Data integration pipelines as code: pipelines, tasks and commands are created using declarative Python code. PostgreSQL as a data processing engine. Extensive web ui. The web browser as the main tool for inspecting, running and debugging pipelines. GNU make semantics. Nodes depend on the completion of upstream nodes. No data dependencies or data flows. No in-app data... -
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Pytente
Uma Ferramenta Computacional para Análise e Recuperação de Patentes
O Pytente é uma solução avançada para automatizar o processo de coleta, armazenamento e tratamento de dados bibliográficos de patentes. A ferramenta foi projetada para simplificar a coleta de grandes volumes de dados em repositórios de acesso aberto. O Pytente garante o armazenamento estruturado das informações, além da validação e eliminação de registros duplicados. Dentre as diversas funcionalidades disponibilizadas pela ferramenta, destacam-se a extração personalizada de subconjuntos de... -
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scArches
Reference mapping for single-cell genomics
Single-cell architecture surgery (scArches) is a package for reference-based analysis of single-cell data. scArches allows your single-cell query data to be analyzed by integrating it into a reference atlas. By mapping your data into an integrated reference you can transfer cell-type annotation from reference to query, identify disease states by mapping to healthy atlas, and advanced applications such as imputing missing data modalities or spatial locations. -
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CloverDX
Design, automate, operate and publish data pipelines at scale
Please, visit www.cloverdx.com for latest product versions. Data integration platform; can be used to transform/map/manipulate data in batch and near-realtime modes. Suppors various input/output formats (CSV,FIXLEN,Excel,XML,JSON,Parquet, Avro,EDI/X12,HL7,COBOL,LOTUS, etc.). Connects to RDBMS/JMS/Kafka/SOAP/Rest/LDAP/S3/HTTP/FTP/ZIP/TAR. CloverDX offers 100+ specialized components which can be further extended by creation of "macros" - subgraphs - and libraries, shareable with 3rd... -
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Hetionet
Hetionet: an integrative network of disease
Hetionet is a hetnet — network with multiple node and edge (relationship) types — which encodes biology. The hetnet was designed for Project Rephetio, which aims to systematically identify why drugs work and predict new therapies for drugs. The JSON and Neo4j formats contain node and edge properties, which are absent in the TSV and matrix formats, including licensing information. Therefore the recommended formats are JSON and Neo4j. Our hetio package in Python reads the JSON format, but it... -
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DataSync Suite is an open source platform for integrating tools like Zimbra, SugarCRM, and Drupal. The tool is focused on a single sign-on, application data integration, and fast, flexible deployment.
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SnapLogic is an Open Source Data Integration framework that combines the power of state-of-the-art dynamic programming languages with standard Web interfaces to solve today's most pressing problems in data integration.
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A lightweight, browsing-based, 100% Python, federated data integration framework. Users may create custom schemas for disparate sources, query and expand results across sources to find related data; for use in fields such as bioinformatics and datamining
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