Search Results for "genomics"

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Showing 4 open source projects for "genomics"

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    vcf2maf

    vcf2maf

    Convert a VCF into a MAF

    vcf2maf is a Perl-based tool developed by the Memorial Sloan Kettering Cancer Center to convert Variant Call Format (VCF) files into Mutation Annotation Format (MAF) files. This conversion standardizes variant annotations, facilitating downstream analyses in cancer genomics. ​
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  • 2

    bio-cargo

    CARGO - Compressed ARchival for GenOmics

    CARGO is a high-level framework that can semi-automatically generate software systems optimized for the compressed storage of arbitrary types of large genomic data collections. Straightforward applications of CARGO methods to compress FASTQ and SAM format archives require only a few lines of code, produce solutions that match and sometimes outperform specialized format-tailored compressors, and scale well to multi-TB datasets.
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  • 3
    The Comparative Genomics Ontology (CGO) is an OWL ontology initially developed to support the integration of comparative genomics data from heterogeneous resources as part of the ComparaGRID project.
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  • 4
    The Comparative Genomics Vocabulary (CGV) is a SKOS representation of comparative genomics containing terms, text definitions and synonyms of the domain. The vocabulary is structured with broader and narrower relationships between the concepts.
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